GWAS1012828_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1012828_H (gestational diabetes QTL GWAS1012828 (human)) Homo sapiens

Symbol: GWAS1012828_H
Name: gestational diabetes QTL GWAS1012828 (human)
RGD ID: 407363852
Trait: gestational diabetes
LOD Score: Not Available
P Value: 8.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38118,663,757 - 18,663,758RGD_MAPPER_PIPELINEGRCh38
GRCh37118,990,251 - 18,990,252RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1604064PAX7paired box 711863084618748866Human

Position Markers

Peak: (rs2236835)
Human AssemblyChrPosition (strand)Source
GRCh38118,663,757 - 18,663,758RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407059527GWAS708503_Hbody mass index QTL GWAS708503 (human)0.000008body mass indexbody mass index (BMI) (CMO:0000105)11866375718663758Human
407363852GWAS1012828_Hgestational diabetes QTL GWAS1012828 (human)8e-10gestational diabetes11866375718663758Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS708503_H GCST002021 Body mass index Up to 13,627 European ancestry individuals A 0.04 0.000008 5.097 rs2236835 0.128 body mass index (EFO:0004340)
 PMID:23669352
GWAS1012828_H GCST90428870 Gestational diabetes mellitus 638 Chinese ancestry cases, 1,062 Chinese ancestry controls A NR 8E-10 9.097 rs2236835 0.1 gestational diabetes (EFO:0004593)
 PMID:37779084
Database Acc Id Source(s)
GWAS Catalog GCST90428870 GWAS Catalog

RGD Curation Notes
Note Type Note Reference