GWAS1010426_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS1010426_H (insomnia QTL GWAS1010426 (human)) Homo sapiens

Symbol: GWAS1010426_H
Name: insomnia QTL GWAS1010426 (human)
RGD ID: 407361450
Trait: insomnia
LOD Score: Not Available
P Value: 2.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381131,116,952 - 31,116,953RGD_MAPPER_PIPELINEGRCh38
GRCh371131,138,499 - 31,138,500RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Insomnia  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1351849DCDC1doublecortin domain containing 1113086360331369739Human

Position Markers

Peak: (rs176372)
Human AssemblyChrPosition (strand)Source
GRCh381131,116,952 - 31,116,953RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576345LVC1_HLeft ventricular contractility QTL 1 (human)3.93Left ventricular contractility11797076733970767Human
1559104SCL15_HSerum cholesterol level QTL 15 (human)2.60.06Lipid levelhyperlipidemia susceptibility111589236841892368Human
407361450GWAS1010426_Hinsomnia QTL GWAS1010426 (human)2e-09insomnia113111695231116953Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1010426_H GCST90131903 Insomnia 390,751 European ancestry female cases, 1,018,386 European ancestry female controls A NR 2E-9 8.699 rs176372 0.007 insomnia (EFO:0004698)
PMID:35835914
Database Acc Id Source(s)
GWAS Catalog GCST90131903 GWAS Catalog

RGD Curation Notes
Note Type Note Reference