GWAS992074_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS992074_H (mean arterial pressure QTL GWAS992074 (human)) Homo sapiens

Symbol: GWAS992074_H
Name: mean arterial pressure QTL GWAS992074 (human)
RGD ID: 407343098
Trait: mean arterial pressure
Measurement Type: mean arterial blood pressure   (CMO:0000009)    
LOD Score: Not Available
P Value: 4.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38850,822,165 - 50,822,166RGD_MAPPER_PIPELINEGRCh38
GRCh37851,734,725 - 51,734,726RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS992074_HHumanmean arterial blood pressure  IAGPrs12548275405850206Based on the EFO term IDGWAS_CATALOGPMID:34594039

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS992074_HHumanmean arterial pressure  IAGPrs12548275405850206 GWAS_CATALOGPMID:34594039
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs12548275)
Human AssemblyChrPosition (strand)Source
GRCh38850,822,165 - 50,822,166RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406933181GWAS582157_Hsystolic blood pressure QTL GWAS582157 (human)4e-08systolic blood pressuresystolic blood pressure (CMO:0000004)85082216550822166Human
407343098GWAS992074_Hmean arterial pressure QTL GWAS992074 (human)4e-12mean arterial pressuremean arterial blood pressure (CMO:0000009)85082216550822166Human
2289597BW470_HBody weight QTL 470 (human)1.3Body weightBMI83977088765770887Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS582157_H GCST90267304 Systolic blood pressure (standard GWA) 275,793 European ancestry individuals T NR 4E-8 7.398 rs12548275 0.38127 systolic blood pressure (EFO:0006335)
 PMID:37106081
GWAS992074_H GCST90018963 Mean arterial pressure 360,863 European ancestry individuals, 145,502 East Asian ancestry individuals T NR 4E-12 11.398 rs12548275 0.0169 mean arterial pressure (EFO:0006340)
 PMID:34594039
Database Acc Id Source(s)
GWAS Catalog GCST90018963 GWAS Catalog

RGD Curation Notes
Note Type Note Reference