GWAS991968_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS991968_H (clear cell renal carcinoma QTL GWAS991968 (human)) Homo sapiens

Symbol: GWAS991968_H
Name: clear cell renal carcinoma QTL GWAS991968 (human)
RGD ID: 407342992
Trait: clear cell renal carcinoma
LOD Score: Not Available
P Value: 3.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3811,161,955 - 1,161,956RGD_MAPPER_PIPELINEGRCh38
GRCh3711,097,335 - 1,097,336RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS991968_HHumanclear cell renal carcinoma  IAGPrs9442385405850206 GWAS_CATALOGPMID:38671320
Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs9442385)
Human AssemblyChrPosition (strand)Source
GRCh3811,161,955 - 1,161,956RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
407342992GWAS991968_Hclear cell renal carcinoma QTL GWAS991968 (human)3e-08clear cell renal carcinoma111619551161956Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS991968_H GCST90320055 Clear cell renal cell carcinoma 752,817 European ancestry individuals, 3,526 African American or Afro-Caribbean individuals, 3,457 Hispanic or Latin American individuals G 0.91 3E-8 7.523 rs9442385 1.15 clear cell renal carcinoma (EFO:0000349)
 PMID:38671320
Database Acc Id Source(s)
GWAS Catalog GCST90320055 GWAS Catalog

RGD Curation Notes
Note Type Note Reference