GWAS987787_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS987787_H (creatinine measurement QTL GWAS987787 (human)) Homo sapiens

Symbol: GWAS987787_H
Name: creatinine measurement QTL GWAS987787 (human)
RGD ID: 407338811
Trait: creatinine measurement
Measurement Type: blood creatinine measurement   (CMO:0000767)    
LOD Score: Not Available
P Value: 1.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381553,629,191 - 53,629,192RGD_MAPPER_PIPELINEGRCh38
GRCh371553,921,388 - 53,921,389RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS987787_HHumanblood creatinine measurement  IAGPrs5812700405850206Based on the EFO term IDGWAS_CATALOGPMID:35213538

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS987787_HHumancreatinine measurement  IAGPrs5812700405850206 GWAS_CATALOGPMID:35213538
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1602418WDR72WD repeat domain 72155351374153762878Human

Position Markers

Peak: (rs5812700)
Human AssemblyChrPosition (strand)Source
GRCh381553,629,191 - 53,629,192RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407068706GWAS717682_Hglomerular filtration rate QTL GWAS717682 (human)9e-18glomerular filtration rateglomerular filtration rate (CMO:0000490)155362919153629192Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407338811GWAS987787_Hcreatinine measurement QTL GWAS987787 (human)1e-12creatinine measurementblood creatinine measurement (CMO:0000767)155362919153629192Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS717682_H GCST008745 Estimated glomerular filtration rate in non-diabetics 152,624 European ancestry individuals, 36,369 African American individuals CGA 0.238 9E-18 17.046 rs5812700 0.547 glomerular filtration rate (EFO:0005208)
 PMID:31451708
GWAS987787_H GCST90092815 Creatinine levels 110,051 European ancestry individuals C 0.745763 1E-12 12 rs5812700 0.0293053 creatinine measurement (EFO:0004518)
 PMID:35213538
None Available GCST90446493 Estimated glomerular filtration rate 58,406 Korean ancestry individuals CGA NR 5E-11 10.302 rs5812700 0.4521 glomerular filtration rate (EFO:0005208)
 PMID:37919891
None Available GCST90446494 Blood urea nitrogen levels 58,406 Korean ancestry individuals CGA NR 0.000007 5.155 rs5812700 0.0069 blood urea nitrogen measurement (EFO:0004741)
 PMID:37919891
Database Acc Id Source(s)
GWAS Catalog GCST90092815 GWAS Catalog

RGD Curation Notes
Note Type Note Reference