GWAS987034_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS987034_H (platelet component distribution width QTL GWAS987034 (human)) Homo sapiens

Symbol: GWAS987034_H
Name: platelet component distribution width QTL GWAS987034 (human)
RGD ID: 407338058
Trait: platelet component distribution width
Measurement Type: platelet distribution width   (CMO:0001350)    
LOD Score: Not Available
P Value: 1.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381540,907,114 - 40,907,115RGD_MAPPER_PIPELINEGRCh38
GRCh371541,199,312 - 41,199,313RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS987034_HHumanplatelet distribution width  IAGPrs139224132405850206Based on the EFO term IDGWAS_CATALOGPMID:32888494

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS987034_HHumanplatelet component distribution width  IAGPrs139224132405850206 GWAS_CATALOGPMID:32888494
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
38619670LOC105370943uncharacterized LOC105370943154090680940909351Human

Position Markers

Peak: (rs139224132)
Human AssemblyChrPosition (strand)Source
GRCh381540,907,114 - 40,907,115RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
407338058GWAS987034_Hplatelet component distribution width QTL GWAS987034 (human)1e-13platelet component distribution widthplatelet distribution width (CMO:0001350)154090711440907115Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS987034_H GCST90002401 Platelet distribution width 408,112 British individuals C 0.020869 1E-13 13 rs139224132 0.067712784 platelet component distribution width (EFO:0007984)
 PMID:32888494
Database Acc Id Source(s)
GWAS Catalog GCST90002401 GWAS Catalog

RGD Curation Notes
Note Type Note Reference