GWAS984211_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS984211_H (BMI-adjusted waist-hip ratio QTL GWAS984211 (human)) Homo sapiens

Symbol: GWAS984211_H
Name: BMI-adjusted waist-hip ratio QTL GWAS984211 (human)
RGD ID: 407335235
Trait: BMI-adjusted waist-hip ratio
LOD Score: Not Available
P Value: 6.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381541,810,087 - 41,810,088RGD_MAPPER_PIPELINEGRCh38
GRCh371542,102,285 - 42,102,286RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS984211_HHumanBMI-adjusted waist-hip ratio  IAGPrs12440605405850206 GWAS_CATALOGPMID:34021172
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1604640MAPKBP1mitogen-activated protein kinase binding protein 1154177448441827855Human

Position Markers

Peak: (rs12440605)
Human AssemblyChrPosition (strand)Source
GRCh381541,810,087 - 41,810,088RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
407069232GWAS718208_Hwaist-hip ratio QTL GWAS718208 (human)4e-11waist-hip ratiowaist to hip ratio (WHR) (CMO:0000020)154181008741810088Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
407335235GWAS984211_HBMI-adjusted waist-hip ratio QTL GWAS984211 (human)6e-11BMI-adjusted waist-hip ratio154181008741810088Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS718208_H GCST008996 Waist-hip ratio 697,734 European ancestry individuals A 0.5243 4E-11 10.398 rs12440605 0.0118 waist-hip ratio (EFO:0004343)
 PMID:30239722
GWAS984211_H GCST90020025 Waist-to-hip ratio adjusted for BMI 219,872 British ancestry women G NR 6E-11 10.222 rs12440605 0.0185009 BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:34021172
Database Acc Id Source(s)
GWAS Catalog GCST90020025 GWAS Catalog

RGD Curation Notes
Note Type Note Reference