GWAS979914_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS979914_H (creatinine measurement QTL GWAS979914 (human)) Homo sapiens

Symbol: GWAS979914_H
Name: creatinine measurement QTL GWAS979914 (human)
RGD ID: 407330938
Trait: creatinine measurement
Measurement Type: blood creatinine measurement   (CMO:0000767)    
LOD Score: Not Available
P Value: 1.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381557,492,706 - 57,492,708RGD_MAPPER_PIPELINEGRCh38
GRCh371557,784,904 - 57,784,906RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS979914_HHumanblood creatinine measurement  IAGPrs11444227405850206Based on the EFO term IDGWAS_CATALOGPMID:36329257

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS979914_HHumancreatinine measurement  IAGPrs11444227405850206 GWAS_CATALOGPMID:36329257
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1353387CGNL1cingulin like 1155737650557550717Human
38625340LOC1079847592-iminobutanoate/2-iminopropanoate deaminase-like155748831257495552Human

Position Markers

Peak: (rs11444227)
Human AssemblyChrPosition (strand)Source
GRCh381557,492,706 - 57,492,708RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
407330938GWAS979914_Hcreatinine measurement QTL GWAS979914 (human)1e-09creatinine measurementblood creatinine measurement (CMO:0000767)155749270657492708Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS979914_H GCST90239628 Creatinine levels 76,850 Taiwanese ancestry individuals ? NR 1E-9 9 rs11444227 0.00609136 creatinine measurement (EFO:0004518)
 PMID:36329257
Database Acc Id Source(s)
GWAS Catalog GCST90239628 GWAS Catalog

RGD Curation Notes
Note Type Note Reference