GWAS979672_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS979672_H (cortical thickness QTL GWAS979672 (human)) Homo sapiens

Symbol: GWAS979672_H
Name: cortical thickness QTL GWAS979672 (human)
RGD ID: 407330696
Trait: cortical thickness
LOD Score: Not Available
P Value: 5E-324
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381539,325,094 - 39,325,095RGD_MAPPER_PIPELINEGRCh38
GRCh371539,617,295 - 39,617,296RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS979672_HHumancortical thickness  IAGPrs56003663405850206 GWAS_CATALOGPMID:34910505
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
38627269LOC105370777uncharacterized LOC105370777153886480639421060Human

Position Markers

Peak: (rs56003663)
Human AssemblyChrPosition (strand)Source
GRCh381539,325,094 - 39,325,095RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
407343733GWAS992709_Hcortical thickness QTL GWAS992709 (human)4e-19cortical thickness153932509439325095Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human
407344201GWAS993177_Hcortical thickness QTL GWAS993177 (human)0.0000006cortical thickness153932509439325095Human
407330696GWAS979672_Hcortical thickness QTL GWAS979672 (human)5e-324cortical thickness153932509439325095Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS979672_H GCST90095131 Vertex-wise cortical thickness 33,748 European ancestry individuals C 0.11 5E-324 323.302 rs56003663 N/A cortical thickness (EFO:0004840)
 PMID:34910505
GWAS992709_H GCST90095137 Vertex-wise cortical thickness 8,072 individuals C 0.11 4E-19 18.398 rs56003663 N/A cortical thickness (EFO:0004840)
 PMID:34910505
GWAS993177_H GCST90095134 Vertex-wise cortical thickness 5,199 individuals C 0.11 6E-7 6.222 rs56003663 N/A cortical thickness (EFO:0004840)
 PMID:34910505
Database Acc Id Source(s)
GWAS Catalog GCST90095131 GWAS Catalog

RGD Curation Notes
Note Type Note Reference