GWAS967921_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS967921_H (brain measurement QTL GWAS967921 (human)) Homo sapiens

Symbol: GWAS967921_H
Name: brain measurement QTL GWAS967921 (human)
RGD ID: 407318945
Trait: brain measurement
Measurement Type: brain measurement   (CMO:0000911)    
LOD Score: Not Available
P Value: 2.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386158,810,455 - 158,810,456RGD_MAPPER_PIPELINEGRCh38
GRCh376159,231,487 - 159,231,488RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS967921_HHumanbrain measurement  IAGPrs3123132405850206Based on the EFO term IDGWAS_CATALOGPMID:34910505

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS967921_HHumanbrain measurement  IAGPrs3123132405850206 GWAS_CATALOGPMID:34910505
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1350208EZRezrin6158765748158819368Human

Position Markers

Peak: (rs3123132)
Human AssemblyChrPosition (strand)Source
GRCh386158,810,455 - 158,810,456RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
407318945GWAS967921_Hbrain measurement QTL GWAS967921 (human)2e-09brain measurementbrain measurement (CMO:0000911)6158810455158810456Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS967921_H GCST90095129 Vertex-wise sulcal depth 33,748 European ancestry individuals T 0.36 2E-9 8.699 rs3123132 5.99 brain measurement (EFO:0004464)
 PMID:34910505
Database Acc Id Source(s)
GWAS Catalog GCST90095129 GWAS Catalog

RGD Curation Notes
Note Type Note Reference