GWAS967707_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS967707_H (phosphatidylethanolamine measurement QTL GWAS967707 (human)) Homo sapiens

Symbol: GWAS967707_H
Name: phosphatidylethanolamine measurement QTL GWAS967707 (human)
RGD ID: 407318731
Trait: phosphatidylethanolamine measurement
LOD Score: Not Available
P Value: 3.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,398,539 - 58,398,540RGD_MAPPER_PIPELINEGRCh38
GRCh371558,690,738 - 58,690,739RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS967707_HHumanphosphatidylethanolamine measurement  IAGPrs17821298405850206 GWAS_CATALOGPMID:35668104
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs17821298)
Human AssemblyChrPosition (strand)Source
GRCh381558,398,539 - 58,398,540RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407318727GWAS967703_Hphosphatidylethanolamine measurement QTL GWAS967703 (human)3e-08phosphatidylethanolamine measurement155839853958398540Human
407290295GWAS939271_Hphosphatidylethanolamine measurement QTL GWAS939271 (human)1e-08phosphatidylethanolamine measurement155839853958398540Human
407293524GWAS942500_Hphosphatidylethanolamine measurement QTL GWAS942500 (human)5e-09phosphatidylethanolamine measurement155839853958398540Human
407318725GWAS967701_Hphosphatidylethanolamine measurement QTL GWAS967701 (human)2e-09phosphatidylethanolamine measurement155839853958398540Human
407289746GWAS938722_Hphosphatidylethanolamine measurement QTL GWAS938722 (human)4e-08phosphatidylethanolamine measurement155839853958398540Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407293232GWAS942208_Hphosphatidylethanolamine measurement QTL GWAS942208 (human)2e-11phosphatidylethanolamine measurement155839853958398540Human
407289758GWAS938734_Hphosphatidylethanolamine measurement QTL GWAS938734 (human)1e-09phosphatidylethanolamine measurement155839853958398540Human
407318731GWAS967707_Hphosphatidylethanolamine measurement QTL GWAS967707 (human)3e-09phosphatidylethanolamine measurement155839853958398540Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
407293531GWAS942507_Hphosphatidylethanolamine measurement QTL GWAS942507 (human)2e-12phosphatidylethanolamine measurement155839853958398540Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS938722_H GCST90024377 Phosphatidylethanolamine (18:1_22:6) (b) levels 4,492 European ancestry individuals A NR 4E-8 7.398 rs17821298 0.141 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS938734_H GCST90024379 Phosphatidylethanolamine (38:5) (a) levels 4,492 European ancestry individuals A NR 1E-9 9 rs17821298 0.157 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
None Available GCST90024375 Phosphatidylethanolamine (18:1_18:2) levels 4,492 European ancestry individuals A NR 4E-8 7.398 rs17821298 0.142 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS939271_H GCST90024364 Phosphatidylethanolamine (17:0_22:6) levels 4,492 European ancestry individuals A NR 1E-8 8 rs17821298 0.148 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
None Available GCST90024373 Phosphatidylethanolamine (18:0_22:6) levels 4,492 European ancestry individuals A NR 4E-8 7.398 rs17821298 0.142 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
None Available GCST90024354 Phosphatidylethanolamine (16:0_18:3) (b) levels 4,492 European ancestry individuals A NR 1E-9 9 rs17821298 0.156 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
None Available GCST90024355 Phosphatidylethanolamine (16:0_20:3) levels 4,492 European ancestry individuals A NR 1E-9 9 rs17821298 0.159 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS942208_H GCST90024358 Phosphatidylethanolamine (16:0_22:6) levels 4,492 European ancestry individuals A NR 2E-11 10.699 rs17821298 0.173 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS942500_H GCST90024361 Phosphatidylethanolamine (17:0_18:1) levels 4,492 European ancestry individuals A NR 5E-9 8.302 rs17821298 0.151 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS942507_H GCST90024362 Phosphatidylethanolamine (17:0_18:2) levels 4,492 European ancestry individuals A NR 2E-12 11.699 rs17821298 0.183 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS967701_H GCST90024346 Phosphatidylethanolamine (15-MHDA_18:2) levels 4,492 European ancestry individuals A NR 2E-9 8.699 rs17821298 0.156 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS967703_H GCST90024347 Phosphatidylethanolamine (15-MHDA_20:4) levels 4,492 European ancestry individuals A NR 3E-8 7.523 rs17821298 0.143 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS967707_H GCST90024348 Phosphatidylethanolamine (15-MHDA_22:6) levels 4,492 European ancestry individuals A NR 3E-9 8.523 rs17821298 0.153 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
None Available GCST90024352 Phosphatidylethanolamine (16:0_18:2) levels 4,492 European ancestry individuals A NR 1E-9 9 rs17821298 0.157 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
Database Acc Id Source(s)
GWAS Catalog GCST90024348 GWAS Catalog

RGD Curation Notes
Note Type Note Reference