GWAS960666_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS960666_H (high density lipoprotein cholesterol measurement QTL GWAS960666 (human)) Homo sapiens

Symbol: GWAS960666_H
Name: high density lipoprotein cholesterol measurement QTL GWAS960666 (human)
RGD ID: 407311690
Trait: high density lipoprotein cholesterol measurement
Measurement Type: blood high density lipoprotein cholesterol level   (CMO:0000052)    
LOD Score: Not Available
P Value: 2.0E-15
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,386,670 - 58,386,671RGD_MAPPER_PIPELINEGRCh38
GRCh371558,678,869 - 58,678,870RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS960666_HHumanblood high density lipoprotein cholesterol level  IAGPrs117901517405850206Based on the EFO term IDGWAS_CATALOGPMID:36376304

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS960666_HHumanhigh density lipoprotein cholesterol measurement  IAGPrs117901517405850206 GWAS_CATALOGPMID:36376304
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs117901517)
Human AssemblyChrPosition (strand)Source
GRCh381558,386,670 - 58,386,671RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407322501GWAS971477_Hlow density lipoprotein cholesterol measurement QTL GWAS971477 (human)8e-22low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)155838667058386671Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407293806GWAS942782_Hphosphatidylethanolamine measurement QTL GWAS942782 (human)1e-10phosphatidylethanolamine measurement155838667058386671Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
407311690GWAS960666_Hhigh density lipoprotein cholesterol measurement QTL GWAS960666 (human)2e-15high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838667058386671Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS942782_H GCST90024363 Phosphatidylethanolamine (17:0_20:4) levels 4,492 European ancestry individuals C NR 1E-10 10 rs117901517 0.304 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS960666_H GCST90179147 High-density lipoprotein levels (MTAG) 361,194 European ancestry individuals T NR 2E-15 14.699 rs117901517 0.03656 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:36376304
GWAS971477_H GCST90179148 Low-density lipoprotein levels (MTAG) 361,194 European ancestry individuals T NR 8E-22 21.097 rs117901517 0.023248 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:36376304
Database Acc Id Source(s)
GWAS Catalog GCST90179147 GWAS Catalog

RGD Curation Notes
Note Type Note Reference