GWAS958468_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS958468_H (triglyceride measurement QTL GWAS958468 (human)) Homo sapiens

Symbol: GWAS958468_H
Name: triglyceride measurement QTL GWAS958468 (human)
RGD ID: 407309492
Trait: triglyceride measurement
Measurement Type: blood triglyceride level   (CMO:0000118)    
LOD Score: Not Available
P Value: 2.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381539,155,328 - 39,155,329RGD_MAPPER_PIPELINEGRCh38
GRCh371539,447,529 - 39,447,530RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS958468_HHumanblood triglyceride level  IAGPrs275179405850206Based on the EFO term IDGWAS_CATALOGPMID:34887591

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS958468_HHumantriglyceride measurement  IAGPrs275179405850206 GWAS_CATALOGPMID:34887591
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
38627269LOC105370777uncharacterized LOC105370777153886480639421060Human

Position Markers

Peak: (rs275179)
Human AssemblyChrPosition (strand)Source
GRCh381539,155,328 - 39,155,329RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
407289575GWAS938551_Hhigh density lipoprotein cholesterol measurement QTL GWAS938551 (human)2e-09high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)153915532839155329Human
407309492GWAS958468_Htriglyceride measurement QTL GWAS958468 (human)2e-13triglyceride measurementblood triglyceride level (CMO:0000118)153915532839155329Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human
407127467GWAS776443_Htriglyceride:HDL cholesterol ratio QTL GWAS776443 (human)3e-08triglyceride:HDL cholesterol ratio153915532839155329Human
407285337GWAS934313_Hhigh density lipoprotein cholesterol measurement QTL GWAS934313 (human)7e-11triglyceride measurementblood triglyceride level (CMO:0000118)153915532839155329Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS776443_H GCST90295949 Triglyceride to HDL cholesterol ratio 402,398 European ancestry individuals A 0.8453 3E-8 7.523 rs275179 0.0247 triglyceride:HDL cholesterol ratio (EFO:0007929)
 PMID:38200128
GWAS934313_H GCST90239649 High density lipoprotein cholesterol levels 40,963 South Asian ancestry individuals, 48,057 Hispanic individuals, 99,432 Admixed African or African ancestry individuals, 146,492 East Asian ancestry individuals, 1,320,016 European ancestry individuals ? NR 7E-11 10.155 rs275179 N/A high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34887591
GWAS938551_H GCST90239652 High density lipoprotein cholesterol levels 1,320,016 European ancestry individuals G 0.15822 2E-9 8.699 rs275179 0.0150309 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34887591
None Available GCST90239664 Triglyceride levels 1,320,016 European ancestry individuals G 0.158418 7E-11 10.155 rs275179 0.0154206 triglyceride measurement (EFO:0004530)
 PMID:34887591
GWAS958468_H GCST90239661 Triglyceride levels 40,963 South Asian ancestry individuals, 48,057 Hispanic individuals, 99,432 Admixed African or African ancestry individuals, 146,492 East Asian ancestry individuals, 1,320,016 European ancestry individuals ? NR 2E-13 12.699 rs275179 N/A triglyceride measurement (EFO:0004530)
 PMID:34887591
Database Acc Id Source(s)
GWAS Catalog GCST90239661 GWAS Catalog

RGD Curation Notes
Note Type Note Reference