GWAS954417_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS954417_H (lean body mass QTL GWAS954417 (human)) Homo sapiens

Symbol: GWAS954417_H
Name: lean body mass QTL GWAS954417 (human)
RGD ID: 407305441
Trait: body lean mass   (VT:0010483)    
Measurement Type: total body lean mass   (CMO:0003950)    
LOD Score: Not Available
P Value: 7.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38122,187,577 - 22,187,578RGD_MAPPER_PIPELINEGRCh38
GRCh37122,514,070 - 22,514,071RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS954417_HHumantotal body lean mass  IAGPrs2744716405850206Based on the EFO term IDGWAS_CATALOGPMID:38538606

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS954417_HHumanbody lean mass  IAGPrs2744716405850206Based on the EFO term IDGWAS_CATALOGPMID:38538606

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS954417_HHumanlean body mass  IAGPrs2744716405850206 GWAS_CATALOGPMID:38538606
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Vertebrate Trait
body lean mass  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs2744716)
Human AssemblyChrPosition (strand)Source
GRCh38122,187,577 - 22,187,578RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407305441GWAS954417_Hlean body mass QTL GWAS954417 (human)7e-10body lean mass (VT:0010483)total body lean mass (CMO:0003950)12218757722187578Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS954417_H GCST90428120 Whole body fat free mass (UKB data field 23101) 337,739 European ancestry individuals G NR 7E-10 9.155 rs2744716 0.0114208 lean body mass (EFO:0004995)
 PMID:38538606
Database Acc Id Source(s)
GWAS Catalog GCST90428120 GWAS Catalog

RGD Curation Notes
Note Type Note Reference