GWAS951481_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS951481_H (prostate cancer QTL GWAS951481 (human)) Homo sapiens

Symbol: GWAS951481_H
Name: prostate cancer QTL GWAS951481 (human)
RGD ID: 407302505
Trait: prostate cancer
LOD Score: Not Available
P Value: 3.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh384105,194,293 - 105,194,294RGD_MAPPER_PIPELINEGRCh38
GRCh374106,115,450 - 106,115,451RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS951481_HHumanprostate cancer  IAGPrs1015521405850206 GWAS_CATALOGPMID:38538606
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1606790TET2tet methylcytosine dioxygenase 24105145875105279803Human
9588832TET2-AS1TET2 antisense RNA 14105171354105352881Human

Position Markers

Peak: (rs1015521)
Human AssemblyChrPosition (strand)Source
GRCh384105,194,293 - 105,194,294RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407302505GWAS951481_Hprostate cancer QTL GWAS951481 (human)3e-13prostate cancer4105194293105194294Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS951481_H GCST90428117 Prostate cancer 7,822 European ancestry cases, 144,172 European ancestry controls T NR 3E-13 12.523 rs1015521 0.132895 PMID:38538606
Database Acc Id Source(s)
GWAS Catalog GCST90428117 GWAS Catalog

RGD Curation Notes
Note Type Note Reference