GWAS945247_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS945247_H (tyrosine-protein phosphatase non-receptor type 1 measurement QTL GWAS945247 (human)) Homo sapiens

Symbol: GWAS945247_H
Name: tyrosine-protein phosphatase non-receptor type 1 measurement QTL GWAS945247 (human)
RGD ID: 407296271
Trait: tyrosine-protein phosphatase non-receptor type 1 measurement
LOD Score: Not Available
P Value: 3E-287
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38201,908,219 - 1,908,220RGD_MAPPER_PIPELINEGRCh38
GRCh37201,888,865 - 1,888,866RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS945247_HHumantyrosine-protein phosphatase non-receptor type 1 measurement  IAGPrs59317774405850206 GWAS_CATALOGPMID:34814699
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
736759SIRPAsignal regulatory protein alpha2018941671940592Human

Position Markers

Peak: (rs59317774)
Human AssemblyChrPosition (strand)Source
GRCh38201,908,219 - 1,908,220RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407296271GWAS945247_Htyrosine-protein phosphatase non-receptor type 1 measurement QTL GWAS945247 (human)3e-287tyrosine-protein phosphatase non-receptor type 1 measurement2019082191908220Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS945247_H GCST90137824 Tyrosine-protein phosphatase non-receptor type substrate 1 levels 1,852 African American or Afro-Caribbean individuals ? NR 3E-287 286.523 rs59317774 1.19 tyrosine-protein phosphatase non-receptor type 1 measurement (EFO:0020834)
 PMID:34814699
Database Acc Id Source(s)
GWAS Catalog GCST90137824 GWAS Catalog

RGD Curation Notes
Note Type Note Reference