GWAS942219_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS942219_H (phosphatidylethanolamine measurement QTL GWAS942219 (human)) Homo sapiens

Symbol: GWAS942219_H
Name: phosphatidylethanolamine measurement QTL GWAS942219 (human)
RGD ID: 407293243
Trait: phosphatidylethanolamine measurement
LOD Score: Not Available
P Value: 1.0E-5
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,276,517 - 58,276,518RGD_MAPPER_PIPELINEGRCh38
GRCh371558,568,716 - 58,568,717RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS942219_HHumanphosphatidylethanolamine measurement  IAGPrs62001677405850206 GWAS_CATALOGPMID:35668104
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs62001677)
Human AssemblyChrPosition (strand)Source
GRCh381558,276,517 - 58,276,518RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407291462GWAS940438_Hphosphatidylethanolamine measurement QTL GWAS940438 (human)2e-11phosphatidylethanolamine measurement155827651758276518Human
407289828GWAS938804_Hphosphatidylethanolamine measurement QTL GWAS938804 (human)3e-08phosphatidylethanolamine measurement155827651758276518Human
407291973GWAS940949_Hphosphatidylethanolamine measurement QTL GWAS940949 (human)0.0000001phosphatidylethanolamine measurement155827651758276518Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407320594GWAS969570_Hphosphatidylethanolamine measurement QTL GWAS969570 (human)3e-09phosphatidylethanolamine measurement155827651758276518Human
407290547GWAS939523_Hphosphatidylethanolamine measurement QTL GWAS939523 (human)1e-10phosphatidylethanolamine measurement155827651758276518Human
407292047GWAS941023_Hphosphatidylethanolamine measurement QTL GWAS941023 (human)6e-11phosphatidylethanolamine measurement155827651758276518Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
407293243GWAS942219_Hphosphatidylethanolamine measurement QTL GWAS942219 (human)0.00001phosphatidylethanolamine measurement155827651758276518Human
407291992GWAS940968_Hphosphatidylethanolamine measurement QTL GWAS940968 (human)2e-08phosphatidylethanolamine measurement155827651758276518Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS938804_H GCST90024375 Phosphatidylethanolamine (18:1_18:2) levels 4,492 European ancestry individuals T NR 3E-8 7.523 rs62001677 0.162 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS939523_H GCST90024365 Phosphatidylethanolamine (18:0_18:1) levels 4,492 European ancestry individuals T NR 1E-10 10 rs62001677 0.185 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS940438_H GCST90024366 Phosphatidylethanolamine (18:0_18:2) levels 4,492 European ancestry individuals T NR 2E-11 10.699 rs62001677 0.195 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS940949_H GCST90024353 Phosphatidylethanolamine (16:0_18:3) (a) levels 4,492 European ancestry individuals T NR 1E-7 7 rs62001677 0.154 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS940968_H GCST90024374 Phosphatidylethanolamine (18:1_18:1) levels 4,492 European ancestry individuals T NR 2E-8 7.699 rs62001677 0.161 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS941023_H GCST90024371 Phosphatidylethanolamine (18:0_22:5) (n3) levels 4,492 European ancestry individuals T NR 6E-11 10.222 rs62001677 0.19 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS942219_H GCST90024359 Phosphatidylethanolamine (16:1_18:2) levels 4,492 European ancestry individuals T NR 0.00001 5 rs62001677 0.128 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
None Available GCST90024361 Phosphatidylethanolamine (17:0_18:1) levels 4,492 European ancestry individuals T NR 2E-8 7.699 rs62001677 0.163 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS969570_H GCST90024351 Phosphatidylethanolamine (16:0_18:1) levels 4,492 European ancestry individuals T NR 3E-9 8.523 rs62001677 0.172 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
Database Acc Id Source(s)
GWAS Catalog GCST90024359 GWAS Catalog

RGD Curation Notes
Note Type Note Reference