GWAS940439_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS940439_H (phosphatidylethanolamine measurement QTL GWAS940439 (human)) Homo sapiens

Symbol: GWAS940439_H
Name: phosphatidylethanolamine measurement QTL GWAS940439 (human)
RGD ID: 407291463
Trait: phosphatidylethanolamine measurement
LOD Score: Not Available
P Value: 3.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,362,292 - 58,362,293RGD_MAPPER_PIPELINEGRCh38
GRCh371558,654,491 - 58,654,492RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS940439_HHumanphosphatidylethanolamine measurement  IAGPrs12912371405850206 GWAS_CATALOGPMID:35668104
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs12912371)
Human AssemblyChrPosition (strand)Source
GRCh381558,362,292 - 58,362,293RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407320598GWAS969574_Hphosphatidylethanolamine measurement QTL GWAS969574 (human)1e-08phosphatidylethanolamine measurement155836229258362293Human
407291463GWAS940439_Hphosphatidylethanolamine measurement QTL GWAS940439 (human)3e-09phosphatidylethanolamine measurement155836229258362293Human
407291700GWAS940676_Hphosphatidylethanolamine measurement QTL GWAS940676 (human)8e-09phosphatidylethanolamine measurement155836229258362293Human
407290082GWAS939058_Hphosphatidylethanolamine measurement QTL GWAS939058 (human)3e-08phosphatidylethanolamine measurement155836229258362293Human
407322499GWAS971475_Hlow density lipoprotein cholesterol measurement QTL GWAS971475 (human)7e-33low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)155836229258362293Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407315968GWAS964944_Hphosphatidylethanolamine measurement QTL GWAS964944 (human)3e-12phosphatidylethanolamine measurement155836229258362293Human
407293229GWAS942205_Hphosphatidylethanolamine measurement QTL GWAS942205 (human)5e-10phosphatidylethanolamine measurement155836229258362293Human
407293530GWAS942506_Hphosphatidylethanolamine measurement QTL GWAS942506 (human)0.0000002phosphatidylethanolamine measurement155836229258362293Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
407292251GWAS941227_Hphosphatidylethanolamine measurement QTL GWAS941227 (human)6e-08phosphatidylethanolamine measurement155836229258362293Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS939058_H GCST90024377 Phosphatidylethanolamine (18:1_22:6) (b) levels 4,492 European ancestry individuals C NR 3E-8 7.523 rs12912371 0.19 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS940439_H GCST90024366 Phosphatidylethanolamine (18:0_18:2) levels 4,492 European ancestry individuals C NR 3E-9 8.523 rs12912371 0.205 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS940676_H GCST90024373 Phosphatidylethanolamine (18:0_22:6) levels 4,492 European ancestry individuals C NR 8E-9 8.097 rs12912371 0.197 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS941227_H GCST90024355 Phosphatidylethanolamine (16:0_20:3) levels 4,492 European ancestry individuals C NR 6E-8 7.222 rs12912371 0.187 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS942205_H GCST90024358 Phosphatidylethanolamine (16:0_22:6) levels 4,492 European ancestry individuals C NR 5E-10 9.302 rs12912371 0.214 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS942506_H GCST90024362 Phosphatidylethanolamine (17:0_18:2) levels 4,492 European ancestry individuals C NR 2E-7 6.699 rs12912371 0.18 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS964944_H GCST90024597 Total Phosphatidylethanolamine levels 4,492 European ancestry individuals C NR 3E-12 11.523 rs12912371 0.24 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS969574_H GCST90024352 Phosphatidylethanolamine (16:0_18:2) levels 4,492 European ancestry individuals C NR 1E-8 8 rs12912371 0.197 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS971475_H GCST90179148 Low-density lipoprotein levels (MTAG) 361,194 European ancestry individuals T NR 7E-33 32.155 rs12912371 0.025592 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:36376304
Database Acc Id Source(s)
GWAS Catalog GCST90024366 GWAS Catalog

RGD Curation Notes
Note Type Note Reference