GWAS939057_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS939057_H (phosphatidylethanolamine measurement QTL GWAS939057 (human)) Homo sapiens

Symbol: GWAS939057_H
Name: phosphatidylethanolamine measurement QTL GWAS939057 (human)
RGD ID: 407290081
Trait: phosphatidylethanolamine measurement
LOD Score: Not Available
P Value: 7.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,287,445 - 58,287,446RGD_MAPPER_PIPELINEGRCh38
GRCh371558,579,644 - 58,579,645RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS939057_HHumanphosphatidylethanolamine measurement  IAGPrs2899623405850206 GWAS_CATALOGPMID:35668104
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs2899623)
Human AssemblyChrPosition (strand)Source
GRCh381558,287,445 - 58,287,446RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407290292GWAS939268_Hphosphatidylethanolamine measurement QTL GWAS939268 (human)1e-10phosphatidylethanolamine measurement155828744558287446Human
407319925GWAS968901_Hphosphatidylethanolamine measurement QTL GWAS968901 (human)6e-19phosphatidylethanolamine measurement155828744558287446Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407290081GWAS939057_Hphosphatidylethanolamine measurement QTL GWAS939057 (human)7e-09phosphatidylethanolamine measurement155828744558287446Human
407290074GWAS939050_Hphosphatidylethanolamine measurement QTL GWAS939050 (human)0.0000003phosphatidylethanolamine measurement155828744558287446Human
407326651GWAS975627_Hlysophosphatidylethanolamine 16:0 measurement QTL GWAS975627 (human)4e-14blood lipid amount (VT:0003949)155828744558287446Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
407318728GWAS967704_Hphosphatidylethanolamine measurement QTL GWAS967704 (human)0.0000004phosphatidylethanolamine measurement155828744558287446Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS939050_H GCST90024376 Phosphatidylethanolamine (18:1_22:6) (a) levels 4,492 European ancestry individuals C NR 3E-7 6.523 rs2899623 0.159 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS939057_H GCST90024377 Phosphatidylethanolamine (18:1_22:6) (b) levels 4,492 European ancestry individuals C NR 7E-9 8.155 rs2899623 0.179 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS939268_H GCST90024364 Phosphatidylethanolamine (17:0_22:6) levels 4,492 European ancestry individuals C NR 1E-10 10 rs2899623 0.198 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS967704_H GCST90024348 Phosphatidylethanolamine (15-MHDA_22:6) levels 4,492 European ancestry individuals C NR 4E-7 6.398 rs2899623 0.158 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS968901_H GCST90024970 Phosphatidylethanolamine (16:0_22:6) levels 6,057 European ancestry individuals C NR 6E-19 18.222 rs2899623 N/A phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS975627_H GCST90024205 Lysophosphatidylethanolamine (16:0) [sn2] levels 4,492 European ancestry individuals C NR 4E-14 13.398 rs2899623 0.234 lysophosphatidylethanolamine 16:0 measurement (EFO:0010366)
 PMID:35668104
Database Acc Id Source(s)
GWAS Catalog GCST90024377 GWAS Catalog

RGD Curation Notes
Note Type Note Reference