GWAS938731_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS938731_H (phosphatidylethanolamine measurement QTL GWAS938731 (human)) Homo sapiens

Symbol: GWAS938731_H
Name: phosphatidylethanolamine measurement QTL GWAS938731 (human)
RGD ID: 407289755
Trait: phosphatidylethanolamine measurement
LOD Score: Not Available
P Value: 4.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,394,210 - 58,394,211RGD_MAPPER_PIPELINEGRCh38
GRCh371558,686,409 - 58,686,410RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS938731_HHumanphosphatidylethanolamine measurement  IAGPrs118078695405850206 GWAS_CATALOGPMID:35668104
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs118078695)
Human AssemblyChrPosition (strand)Source
GRCh381558,394,210 - 58,394,211RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407322503GWAS971479_Hlow density lipoprotein cholesterol measurement QTL GWAS971479 (human)4e-20low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)155839421058394211Human
407319923GWAS968899_Hphosphatidylethanolamine measurement QTL GWAS968899 (human)4e-09phosphatidylethanolamine measurement155839421058394211Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407291692GWAS940668_Hphosphatidylethanolamine measurement QTL GWAS940668 (human)1e-08phosphatidylethanolamine measurement155839421058394211Human
407311692GWAS960668_Hhigh density lipoprotein cholesterol measurement QTL GWAS960668 (human)3e-11high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155839421058394211Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
407289755GWAS938731_Hphosphatidylethanolamine measurement QTL GWAS938731 (human)4e-08phosphatidylethanolamine measurement155839421058394211Human
407292265GWAS941241_Hphosphatidylethanolamine measurement QTL GWAS941241 (human)2e-08phosphatidylethanolamine measurement155839421058394211Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS938731_H GCST90024379 Phosphatidylethanolamine (38:5) (a) levels 4,492 European ancestry individuals A NR 4E-8 7.398 rs118078695 0.623 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS940668_H GCST90024371 Phosphatidylethanolamine (18:0_22:5) (n3) levels 4,492 European ancestry individuals A NR 1E-8 8 rs118078695 0.646 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS941241_H GCST90024357 Phosphatidylethanolamine (16:0_20:5) levels 4,492 European ancestry individuals A NR 2E-8 7.699 rs118078695 0.637 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS960668_H GCST90179147 High-density lipoprotein levels (MTAG) 361,194 European ancestry individuals A NR 3E-11 10.523 rs118078695 0.074247 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:36376304
GWAS968899_H GCST90024969 Phosphatidylethanolamine (16:0_20:5) levels 6,057 European ancestry individuals A NR 4E-9 8.398 rs118078695 N/A phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
GWAS971479_H GCST90179148 Low-density lipoprotein levels (MTAG) 361,194 European ancestry individuals A NR 4E-20 19.398 rs118078695 0.054362 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:36376304
Database Acc Id Source(s)
GWAS Catalog GCST90024379 GWAS Catalog

RGD Curation Notes
Note Type Note Reference