GWAS936579_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS936579_H (atrial fibrillation QTL GWAS936579 (human)) Homo sapiens

Symbol: GWAS936579_H
Name: atrial fibrillation QTL GWAS936579 (human)
RGD ID: 407287603
Trait: atrial fibrillation
LOD Score: Not Available
P Value: 1.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38121,956,126 - 21,956,127RGD_MAPPER_PIPELINEGRCh38
GRCh37122,282,619 - 22,282,620RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs7529220)
Human AssemblyChrPosition (strand)Source
GRCh38121,956,126 - 21,956,127RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407287603GWAS936579_Hatrial fibrillation QTL GWAS936579 (human)1e-09atrial fibrillation12195612621956127Human
406898619GWAS547595_Hatrial fibrillation QTL GWAS547595 (human)2e-15atrial fibrillation12195612621956127Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
407221371GWAS870347_HPR interval QTL GWAS870347 (human)2e-10atrial fibrillationPR interval (CMO:0000233)12195612621956127Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS547595_H GCST90204201 Atrial fibrillation 77,690 European ancestry cases, 1,167,040 European ancestry controls, 67,864 Japanese ancestry cases, 1,026,594 Japanese ancestry controls C 0.799 2E-15 14.699 rs7529220 0.0627 atrial fibrillation (EFO:0000275)
 PMID:36653681
GWAS870347_H GCST010321 PR interval 271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals C 0.84 2E-10 9.699 rs7529220 0.58 PR interval (EFO:0004462)
 PMID:32439900
GWAS936579_H GCST90132229 Atrial fibrillation (MTAG) 1,030,836 European ancestry individuals T NR 1E-9 9 rs7529220 0.012 atrial fibrillation (EFO:0000275)
 PMID:35872910
None Available GCST006414 Atrial fibrillation 60,620 European ancestry cases, 970,216 European ancestry controls C 0.847 2E-10 9.699 rs7529220 1.06 atrial fibrillation (EFO:0000275)
 PMID:30061737
Database Acc Id Source(s)
GWAS Catalog GCST90132229 GWAS Catalog

RGD Curation Notes
Note Type Note Reference