GWAS935108_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS935108_H (ficolin-2 measurement QTL GWAS935108 (human)) Homo sapiens

Symbol: GWAS935108_H
Name: ficolin-2 measurement QTL GWAS935108 (human)
RGD ID: 407286132
Trait: ficolin-2 measurement
LOD Score: Not Available
P Value: 1.0E-72
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh389134,860,694 - 134,860,695RGD_MAPPER_PIPELINEGRCh38
GRCh379137,752,540 - 137,752,541RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS935108_HHumanficolin-2 measurement  IAGPrs57136797405850206 GWAS_CATALOGPMID:34814699
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
38621445LOC101448202uncharacterized LOC1014482029134819415134872618Human

Position Markers

Peak: (rs57136797)
Human AssemblyChrPosition (strand)Source
GRCh389134,860,694 - 134,860,695RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407286132GWAS935108_Hficolin-2 measurement QTL GWAS935108 (human)1e-72ficolin-2 measurement9134860694134860695Human
407235414GWAS884390_Hblood protein measurement QTL GWAS884390 (human)9e-87blood protein measurementblood protein measurement (CMO:0000028)9134860694134860695Human
406894228GWAS543204_Hficolin-2 measurement QTL GWAS543204 (human)4e-72ficolin-2 measurement9134860694134860695Human
407199650GWAS848626_Hblood protein measurement QTL GWAS848626 (human)2e-48blood protein measurementblood protein measurement (CMO:0000028)9134860694134860695Human
407321627GWAS970603_Hficolin-2 measurement QTL GWAS970603 (human)1e-21ficolin-2 measurement9134860694134860695Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS543204_H GCST90241185 Ficolin-2 levels (FCN2.3313.21.2) 3,301 European ancestry individuals T 0.164 4E-72 71.398 rs57136797 0.63 ficolin-2 measurement (EFO:0008135)
 PMID:29875488
GWAS848626_H GCST006585 Blood protein levels 3,200 European ancestry individuals A 0.845 2E-48 47.699 rs57136797 0.4840615 blood protein measurement (EFO:0007937)
 PMID:30072576
GWAS884390_H GCST90088307 Serum levels of protein FCN2 5,346 Icelandic ancestry individuals T 0.1373 9E-87 86.046 rs57136797 0.476317 blood protein measurement (EFO:0007937)
 PMID:35078996
GWAS935108_H GCST90137769 Ficolin-2 levels 1,852 African American or Afro-Caribbean individuals ? NR 1E-72 72 rs57136797 0.56 ficolin-2 measurement (EFO:0008135)
 PMID:34814699
GWAS970603_H GCST90161707 Ficolin-2 levels 2,935 Qatari ancestry individuals T 0.0877342 1E-21 21 rs57136797 0.468033 ficolin-2 measurement (EFO:0008135)
 PMID:36168886
Database Acc Id Source(s)
GWAS Catalog GCST90137769 GWAS Catalog

RGD Curation Notes
Note Type Note Reference