LOC101448202 (uncharacterized LOC101448202) - Rat Genome Database

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Gene: LOC101448202 (uncharacterized LOC101448202) Homo sapiens
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Symbol: LOC101448202
Name: uncharacterized LOC101448202
RGD ID: 38621445
Description: ASSOCIATED WITH Abnormal bleeding; Abnormality of the lower limb; connective tissue disease
Type: ncrna
RefSeq Status: VALIDATED
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389134,819,415 - 134,872,618 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh379137,711,261 - 137,764,464 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map9q34.3NCBI
HuRef9107,175,330 - 107,176,124 (-)NCBIHuRef
CHM1_19137,860,590 - 137,861,384 (-)NCBICHM1_1
T2T-CHM13v2.09147,040,392 - 147,094,307 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 88 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LOC101448202Humanconnective tissue disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Connective tissue disorderClinVarPMID:17576681 more ...
LOC101448202Humanconnective tissue disease  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:25741868 and PMID:28492532
LOC101448202HumanEhlers-Danlos syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Ehlers-Danlos syndromeClinVar 
LOC101448202HumanEhlers-Danlos syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Ehlers-Danlos syndromeClinVarPMID:16431952 more ...
LOC101448202HumanEhlers-Danlos syndrome  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Ehlers-Danlos syndromeClinVarPMID:25741868 more ...
LOC101448202HumanEhlers-Danlos syndrome  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Ehlers-Danlos syndromeClinVarPMID:25741868 and PMID:28492532
LOC101448202HumanEhlers-Danlos syndrome  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Ehlers-Danlos syndromeClinVarPMID:25741868
LOC101448202HumanEhlers-Danlos syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Ehlers-Danlos syndromeClinVarPMID:10471441 more ...
LOC101448202HumanEhlers-Danlos syndrome arthrochalasia type 1  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Ehlers-Danlos syndrome type 7AClinVarPMID:10471441 more ...
LOC101448202HumanEhlers-Danlos syndrome arthrochalasia type 1  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVar 
LOC101448202HumanEhlers-Danlos syndrome arthrochalasia type 1  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Ehlers-Danlos syndrome type 7AClinVarPMID:25741868
LOC101448202HumanEhlers-Danlos syndrome arthrochalasia type 1  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Ehlers-Danlos syndrome type 7AClinVarPMID:28492532
LOC101448202HumanEhlers-Danlos syndrome arthrochalasia type 1  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Ehlers-Danlos syndrome type 7AClinVarPMID:25741868 and PMID:28492532
LOC101448202HumanEhlers-Danlos syndrome arthrochalasia type 1  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Ehlers-Danlos syndrome type 7AClinVarPMID:28492532 and PMID:32508047
LOC101448202HumanEhlers-Danlos syndrome arthrochalasia type 1  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Ehlers-Danlos syndrome type 7AClinVarPMID:22696272 more ...
LOC101448202HumanEhlers-Danlos syndrome classic type 1  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Ehlers-Danlos syndrome more ...ClinVarPMID:28492532 and PMID:8923000
LOC101448202HumanEhlers-Danlos syndrome classic type 1  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Ehlers-Danlos syndrome and type 1ClinVarPMID:16431952 more ...
LOC101448202HumanEhlers-Danlos syndrome classic type 1  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Ehlers-Danlos syndrome and type 1ClinVarPMID:25741868 more ...
LOC101448202HumanEhlers-Danlos syndrome classic type 1  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:28492532
LOC101448202HumanEhlers-Danlos syndrome classic type 1  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:28492532
1 to 20 of 88 rows

1 to 9 of 9 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LOC101448202HumanAbnormal bleeding  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Abnormal bleedingClinVar 
LOC101448202HumanAbnormality of the lower limb  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Abnormality of the lower limbClinVarPMID:25741868 and PMID:28492532
LOC101448202HumanHyperextensible skin  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Hyperextensible skinClinVarPMID:25741868
LOC101448202HumanNarrow chest  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Narrow chestClinVarPMID:25741868 and PMID:28492532
LOC101448202HumanNeuropathic spinal arthropathy  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Neuropathic spinal arthropathyClinVarPMID:25741868 and PMID:28492532
LOC101448202HumanRelative macrocephaly  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Relative macrocephalyClinVarPMID:25741868 and PMID:28492532
LOC101448202HumanScoliosis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: ScoliosisClinVarPMID:25741868 and PMID:28492532
LOC101448202HumanShoulder subluxation  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Shoulder subluxationClinVar 
LOC101448202HumanSkeletal dysplasia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Skeletal dysplasiaClinVarPMID:25741868 and PMID:28492532
1 to 9 of 9 rows
PMID:12477932  



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Variants in LOC101448202
742 total Variants

1 to 10 of 833 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_000093.5(COL5A1):c.4955-137C>T single nucleotide variant not provided [RCV001572406] Chr9:134825655 [GRCh38]
Chr9:137717501 [GRCh37]
Chr9:9q34.3
likely benign
NM_000093.5(COL5A1):c.5411C>A (p.Thr1804Asn) single nucleotide variant Abnormal bleeding [RCV001270554] Chr9:134842197 [GRCh38]
Chr9:137734043 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_000093.5(COL5A1):c.5294dup (p.Phe1766fs) duplication not provided [RCV003314801] Chr9:134835127..134835128 [GRCh38]
Chr9:137726973..137726974 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_000093.5(COL5A1):c.4584G>A (p.Gly1528=) single nucleotide variant Familial thoracic aortic aneurysm and aortic dissection [RCV003301400] Chr9:134822126 [GRCh38]
Chr9:137713972 [GRCh37]
Chr9:9q34.3
likely benign
NM_000093.5(COL5A1):c.4699-140C>T single nucleotide variant not provided [RCV001690971] Chr9:134824460 [GRCh38]
Chr9:137716306 [GRCh37]
Chr9:9q34.3
benign
NM_000093.5(COL5A1):c.4608+232C>T single nucleotide variant not provided [RCV001574876] Chr9:134822382 [GRCh38]
Chr9:137714228 [GRCh37]
Chr9:9q34.3
likely benign
NM_000093.5(COL5A1):c.5136+122G>A single nucleotide variant not provided [RCV003314840] Chr9:134830166 [GRCh38]
Chr9:137722012 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_000093.5(COL5A1):c.5067+47G>A single nucleotide variant not provided [RCV001581812] Chr9:134825951 [GRCh38]
Chr9:137717797 [GRCh37]
Chr9:9q34.3
likely benign
NM_000093.5(COL5A1):c.5510T>C (p.Met1837Thr) single nucleotide variant Ehlers-Danlos syndrome, classic type, 1 [RCV003105003] Chr9:134842296 [GRCh38]
Chr9:137734142 [GRCh37]
Chr9:9q34.3
benign|uncertain significance
NM_000093.5(COL5A1):c.4608+18G>C single nucleotide variant Ehlers-Danlos syndrome, classic type, 1 [RCV003107005] Chr9:134822168 [GRCh38]
Chr9:137714014 [GRCh37]
Chr9:9q34.3
likely benign
1 to 10 of 833 rows

1 to 10 of 13 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597119923GWAS1215997_Hblood protein measurement QTL GWAS1215997 (human)9e-87blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)9134860694134860695Human
597101425GWAS1197499_Hprotein measurement QTL GWAS1197499 (human)5e-09protein measurement9134828718134828719Human
597037534GWAS1133608_Hblood protein measurement QTL GWAS1133608 (human)2e-48blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)9134860694134860695Human
597474060GWAS1570134_Hthyrotoxic periodic paralysis QTL GWAS1570134 (human)0.000003thyrotoxic periodic paralysis9134864107134864108Human
597263880GWAS1359954_Hficolin-2 measurement QTL GWAS1359954 (human)1e-72ficolin-2 measurement9134860694134860695Human
597301419GWAS1397493_Hficolin-2 measurement QTL GWAS1397493 (human)4e-72ficolin-2 measurement9134860694134860695Human
597177993GWAS1274067_Hficolin-2 measurement QTL GWAS1274067 (human)3e-422ficolin-2 measurement9134862160134862161Human
597177994GWAS1274068_Hficolin-2 measurement QTL GWAS1274068 (human)2e-18ficolin-2 measurement9134861663134861664Human
597068706GWAS1164780_Hlung carcinoma QTL GWAS1164780 (human)0.000004lung carcinoma9134849951134849952Human
597119745GWAS1215819_Hblood protein measurement QTL GWAS1215819 (human)2e-36blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)9134858629134858630Human

1 to 10 of 13 rows






RefSeq Acc Id: NR_103451
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh389134,819,415 - 134,872,618 (-)NCBI
T2T-CHM13v2.09147,040,392 - 147,094,307 (-)NCBI
Sequence:


Database
Acc Id
Source(s)
COSMIC LOC101448202 COSMIC
GTEx LOC101448202 GTEx
Human Proteome Map LOC101448202 Human Proteome Map
NCBI Gene LOC101448202 ENTREZGENE
RNAcentral URS000075CC5B RNACentral