GWAS931449_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS931449_H (vaginal microbiome measurement QTL GWAS931449 (human)) Homo sapiens

Symbol: GWAS931449_H
Name: vaginal microbiome measurement QTL GWAS931449 (human)
RGD ID: 407282473
Trait: vaginal microbiome measurement
LOD Score: Not Available
P Value: 6.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38110,714,799 - 10,714,800RGD_MAPPER_PIPELINEGRCh38
GRCh37110,774,856 - 10,774,857RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS931449_HHumanvaginal microbiome measurement  IAGPrs284247405850206 GWAS_CATALOGPMID:34282934
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1606535CASZ1castor zinc finger 111063660410796646Human

Position Markers

Peak: (rs284247)
Human AssemblyChrPosition (strand)Source
GRCh38110,714,799 - 10,714,800RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
406983552GWAS632528_Huterine fibroid QTL GWAS632528 (human)0.000004uterine fibroid11071479910714800Human
406983496GWAS632472_Huterine fibroid QTL GWAS632472 (human)0.000003uterine fibroid11071479910714800Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
407282473GWAS931449_Hvaginal microbiome measurement QTL GWAS931449 (human)0.000006vaginal microbiome measurement11071479910714800Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS632472_H GCST009833 Uterine fibroids (MTAG) 5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls ? NR 0.000003 5.523 rs284247 1.0309278 uterine fibroid (EFO:0000731)
 PMID:31488892
GWAS632528_H GCST009834 Uterine fibroids 5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls ? NR 0.000004 5.398 rs284247 1.098901 uterine fibroid (EFO:0000731)
 PMID:31488892
GWAS931449_H GCST90026721 Vaginal microbiome MetaCyc pathway (COLANSYN-PWY|colanic acid building blocks biosynthesis) 315 Chinese ancestry individuals G NR 0.000006 5.222 rs284247 0.3376 vaginal microbiome measurement (EFO:0011013)
 PMID:34282934
Database Acc Id Source(s)
GWAS Catalog GCST90026721 GWAS Catalog

RGD Curation Notes
Note Type Note Reference