GWAS928933_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS928933_H (breast carcinoma QTL GWAS928933 (human)) Homo sapiens

Symbol: GWAS928933_H
Name: breast carcinoma QTL GWAS928933 (human)
RGD ID: 407279957
Trait: breast carcinoma
LOD Score: Not Available
P Value: 4.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381537,206,970 - 37,206,971RGD_MAPPER_PIPELINEGRCh38
GRCh371537,499,171 - 37,499,172RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs184531260)
Human AssemblyChrPosition (strand)Source
GRCh381537,206,970 - 37,206,971RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
407279957GWAS928933_Hbreast carcinoma QTL GWAS928933 (human)0.0000004breast carcinoma153720697037206971Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS928933_H GCST004988 Breast cancer 76,192 European ancestry cases, 63,082 European ancestry controls A 0.0113 4E-7 6.398 rs184531260 0.21 breast carcinoma (EFO:0000305)
 PMID:29059683
Database Acc Id Source(s)
GWAS Catalog GCST004988 GWAS Catalog

RGD Curation Notes
Note Type Note Reference