GWAS926847_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS926847_H (body fat percentage QTL GWAS926847 (human)) Homo sapiens

Symbol: GWAS926847_H
Name: body fat percentage QTL GWAS926847 (human)
RGD ID: 407277871
Trait: body fat percentage
Measurement Type: body fat percentage   (CMO:0000302)    
LOD Score: Not Available
P Value: 4.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381551,448,859 - 51,448,860RGD_MAPPER_PIPELINEGRCh38
GRCh371551,741,056 - 51,741,057RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS926847_HHumanbody fat percentage  IAGPrs3751585405850206Based on the EFO term IDGWAS_CATALOGPMID:30593698

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS926847_HHumanbody fat percentage  IAGPrs3751585405850206 GWAS_CATALOGPMID:30593698
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1347338DMXL2Dmx like 2155144779151622771Human

Position Markers

Peak: (rs3751585)
Human AssemblyChrPosition (strand)Source
GRCh381551,448,859 - 51,448,860RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407276639GWAS925615_Hbody fat percentage QTL GWAS925615 (human)0.0000001body fat percentagebody fat percentage (CMO:0000302)155144885951448860Human
407277871GWAS926847_Hbody fat percentage QTL GWAS926847 (human)0.000004body fat percentagebody fat percentage (CMO:0000302)155144885951448860Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS925615_H GCST007064 Body fat percentage 70,700 European ancestry female individuals, 85,261 European ancestry male individuals ? NR 1E-7 7 rs3751585 0.13945 body fat percentage (EFO:0007800)
 PMID:30593698
GWAS926847_H GCST007064 Body fat percentage 70,700 European ancestry female individuals, 85,261 European ancestry male individuals ? NR 0.000004 5.398 rs3751585 0.14907 body fat percentage (EFO:0007800)
 PMID:30593698
Database Acc Id Source(s)
GWAS Catalog GCST007064 GWAS Catalog

RGD Curation Notes
Note Type Note Reference