GWAS926847_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS926847_H (body fat percentage QTL GWAS926847 (human)) Homo sapiens

Symbol: GWAS926847_H
Name: body fat percentage QTL GWAS926847 (human)
RGD ID: 407277871
Trait: body fat mass   (VT:0010482)    
Measurement Type: body fat percentage   (CMO:0000302)    
LOD Score: Not Available
P Value: 4.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381551,448,859 - 51,448,860RGD_MAPPER_PIPELINEGRCh38
GRCh371551,741,056 - 51,741,057RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS926847_HHumanbody fat percentage  IAGPrs3751585405850206Based on the EFO term IDGWAS_CATALOGPMID:30593698

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS926847_HHumanbody fat mass  IAGPrs3751585405850206 GWAS_CATALOGPMID:30593698

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS926847_HHumanbody fat percentage  IAGPrs3751585405850206 GWAS_CATALOGPMID:30593698

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1347338DMXL2Dmx like 2155144779151622771Human


Peak: (rs3751585)
Human AssemblyChrPosition (strand)Source
GRCh381551,448,859 - 51,448,860RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407277871GWAS926847_Hbody fat percentage QTL GWAS926847 (human)0.000004body fat mass (VT:0010482)body fat percentage (CMO:0000302)155144885951448860Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
597034729GWAS1130803_Hbody fat percentage QTL GWAS1130803 (human)0.0000001body fat mass (VT:0010482)body fat percentage (CMO:0000302)155144885951448860Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS926847_H GCST007064 Body fat percentage 70,700 European ancestry female individuals, 85,261 European ancestry male individuals ? NR 0.000004 5.398 rs3751585 0.14907 body fat percentage (EFO:0007800)
 PMID:30593698
GWAS1130803_H GCST007064 Body fat percentage 70,700 European ancestry female individuals, 85,261 European ancestry male individuals ? NR 1E-7 7 rs3751585 0.13945 body fat percentage (EFO:0007800)
 PMID:30593698
Database
Acc Id
Source(s)
GWAS Catalog GCST007064 GWAS Catalog

Note Type Note Reference