GWAS926638_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS926638_H (body height QTL GWAS926638 (human)) Homo sapiens

Symbol: GWAS926638_H
Name: body height QTL GWAS926638 (human)
RGD ID: 407277662
Trait: body height   (VT:0001253)    
Measurement Type: body height   (CMO:0000106)    
LOD Score: Not Available
P Value: 2E-125
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3819,279,146 - 9,279,147RGD_MAPPER_PIPELINEGRCh38
GRCh3719,339,205 - 9,339,206RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS926638_HHumanbody height  IAGPrs11590326405850206Based on the EFO term IDGWAS_CATALOGPMID:36224396

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS926638_HHumanbody height  IAGPrs11590326405850206Based on the EFO term IDGWAS_CATALOGPMID:36224396

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS926638_HHumanbody height  IAGPrs11590326405850206 GWAS_CATALOGPMID:36224396
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
body height  (IAGP)

Vertebrate Trait
body height  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs11590326)
Human AssemblyChrPosition (strand)Source
GRCh3819,279,146 - 9,279,147RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407313503GWAS962479_HBMI-adjusted waist circumference QTL GWAS962479 (human)3e-09BMI-adjusted waist circumference192791469279147Human
407277662GWAS926638_Hbody height QTL GWAS926638 (human)2e-125body height (VT:0001253)body height (CMO:0000106)192791469279147Human
407028488GWAS677464_Hsex hormone-binding globulin measurement QTL GWAS677464 (human)3e-08sex hormone-binding globulin measurement192791469279147Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
406926412GWAS575388_Hbody height QTL GWAS575388 (human)7e-16body height (VT:0001253)body height (CMO:0000106)192791469279147Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS575388_H GCST90245844 Height 455,180 Hispanic or Latin American individuals A 0.2112 7E-16 15.155 rs11590326 0.0212 body height (EFO:0004339)
 PMID:36224396
GWAS677464_H GCST90239822 Sex hormone-binding globulin levels 188,443 British ancestry women ? NR 3E-8 7.523 rs11590326 0.0188011 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:36653534
GWAS926638_H GCST90245848 Height 5,314,291 European ancestry, Hispanic or Latin American, East Asian ancestry, African ancestry, South Asian ancestry individuals A 0.2619 2E-125 124.699 rs11590326 0.0172 body height (EFO:0004339)
 PMID:36224396
GWAS962479_H GCST90020024 A body shape index 219,872 British ancestry women A NR 3E-9 8.523 rs11590326 0.0188928 BMI-adjusted waist circumference (EFO:0007789)
 PMID:34021172
Database Acc Id Source(s)
GWAS Catalog GCST90245848 GWAS Catalog

RGD Curation Notes
Note Type Note Reference