GWAS926322_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS926322_H (body height QTL GWAS926322 (human)) Homo sapiens

Symbol: GWAS926322_H
Name: body height QTL GWAS926322 (human)
RGD ID: 407277346
Trait: body height   (VT:0001253)    
Measurement Type: body height   (CMO:0000106)    
LOD Score: Not Available
P Value: 4.0E-59
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3813,402,150 - 3,402,151RGD_MAPPER_PIPELINEGRCh38
GRCh3713,318,714 - 3,318,715RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS926322_HHumanbody height  IAGPrs5024246405850206Based on the EFO term IDGWAS_CATALOGPMID:36224396

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS926322_HHumanbody height  IAGPrs5024246405850206Based on the EFO term IDGWAS_CATALOGPMID:36224396

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS926322_HHumanbody height  IAGPrs5024246405850206 GWAS_CATALOGPMID:36224396
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
body height  (IAGP)

Vertebrate Trait
body height  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1353101PRDM16PR/SET domain 16130692033438621Human

Position Markers

Peak: (rs5024246)
Human AssemblyChrPosition (strand)Source
GRCh3813,402,150 - 3,402,151RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
407277346GWAS926322_Hbody height QTL GWAS926322 (human)4e-59body height (VT:0001253)body height (CMO:0000106)134021503402151Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
406908143GWAS557119_Hbody height QTL GWAS557119 (human)4e-10body height (VT:0001253)body height (CMO:0000106)134021503402151Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS557119_H GCST007841 Height approximately 458,000 European ancestry individuals ? NR 4E-10 9.398 rs5024246 N/A body height (EFO:0004339)
 PMID:30595370
GWAS926322_H GCST90245848 Height 5,314,291 European ancestry, Hispanic or Latin American, East Asian ancestry, African ancestry, South Asian ancestry individuals A 0.3164 4E-59 58.398 rs5024246 0.0109 body height (EFO:0004339)
 PMID:36224396
Database Acc Id Source(s)
GWAS Catalog GCST90245848 GWAS Catalog

RGD Curation Notes
Note Type Note Reference