GWAS926069_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS926069_H (body height QTL GWAS926069 (human)) Homo sapiens

Symbol: GWAS926069_H
Name: body height QTL GWAS926069 (human)
RGD ID: 407277093
Trait: body height   (VT:0001253)    
Measurement Type: body height   (CMO:0000106)    
LOD Score: Not Available
P Value: 2.0E-15
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381560,284,063 - 60,284,064RGD_MAPPER_PIPELINEGRCh38
GRCh371560,576,262 - 60,576,263RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS926069_HHumanbody height  IAGPrs17191323405850206Based on the EFO term IDGWAS_CATALOGPMID:36224396

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS926069_HHumanbody height  IAGPrs17191323405850206Based on the EFO term IDGWAS_CATALOGPMID:36224396

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS926069_HHumanbody height  IAGPrs17191323405850206 GWAS_CATALOGPMID:36224396
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
body height  (IAGP)

Vertebrate Trait
body height  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs17191323)
Human AssemblyChrPosition (strand)Source
GRCh381560,284,063 - 60,284,064RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407277093GWAS926069_Hbody height QTL GWAS926069 (human)2e-15body height (VT:0001253)body height (CMO:0000106)156028406360284064Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS926069_H GCST90245848 Height 5,314,291 European ancestry, Hispanic or Latin American, East Asian ancestry, African ancestry, South Asian ancestry individuals A 0.1381 2E-15 14.699 rs17191323 0.007 body height (EFO:0004339)
 PMID:36224396
Database Acc Id Source(s)
GWAS Catalog GCST90245848 GWAS Catalog

RGD Curation Notes
Note Type Note Reference