GWAS925743_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS925743_H (body height QTL GWAS925743 (human)) Homo sapiens

Symbol: GWAS925743_H
Name: body height QTL GWAS925743 (human)
RGD ID: 407276767
Trait: body height   (VT:0001253)    
Measurement Type: body height   (CMO:0000106)    
LOD Score: Not Available
P Value: 7.0E-28
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381550,272,687 - 50,272,688RGD_MAPPER_PIPELINEGRCh38
GRCh371550,564,884 - 50,564,885RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS925743_HHumanbody height  IAGPrs3959666405850206Based on the EFO term IDGWAS_CATALOGPMID:36224396

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS925743_HHumanbody height  IAGPrs3959666405850206Based on the EFO term IDGWAS_CATALOGPMID:36224396

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS925743_HHumanbody height  IAGPrs3959666405850206 GWAS_CATALOGPMID:36224396
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
body height  (IAGP)

Vertebrate Trait
body height  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs3959666)
Human AssemblyChrPosition (strand)Source
GRCh381550,272,687 - 50,272,688RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407276767GWAS925743_Hbody height QTL GWAS925743 (human)7e-28body height (VT:0001253)body height (CMO:0000106)155027268750272688Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS925743_H GCST90245848 Height 5,314,291 European ancestry, Hispanic or Latin American, East Asian ancestry, African ancestry, South Asian ancestry individuals A 0.0733 7E-28 27.155 rs3959666 0.0132 body height (EFO:0004339)
 PMID:36224396
Database Acc Id Source(s)
GWAS Catalog GCST90245848 GWAS Catalog

RGD Curation Notes
Note Type Note Reference