GWAS924586_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS924586_H (high density lipoprotein cholesterol measurement QTL GWAS924586 (human)) Homo sapiens

Symbol: GWAS924586_H
Name: high density lipoprotein cholesterol measurement QTL GWAS924586 (human)
RGD ID: 407275610
Trait: high density lipoprotein cholesterol measurement
Measurement Type: blood high density lipoprotein cholesterol level   (CMO:0000052)    
LOD Score: Not Available
P Value: 5.0E-46
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38819,958,045 - 19,958,046RGD_MAPPER_PIPELINEGRCh38
GRCh37819,815,556 - 19,815,557RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS924586_HHumanblood high density lipoprotein cholesterol level  IAGPrs287405850206Based on the EFO term IDGWAS_CATALOGPMID:30698716

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS924586_HHumanhigh density lipoprotein cholesterol measurement  IAGPrs287405850206 GWAS_CATALOGPMID:30698716
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
70836LPLlipoprotein lipase81993925319967259Human

Position Markers

Peak: (rs287)
Human AssemblyChrPosition (strand)Source
GRCh38819,958,045 - 19,958,046RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407093953GWAS742929_Halcohol consumption measurement, high density lipoprotein cholesterol measurement QTL GWAS742929 (human)3e-69alcohol consumption measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
407151808GWAS800784_Hfree cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS800784 (human)1e-09free cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
407092935GWAS741911_Halcohol consumption measurement, high density lipoprotein cholesterol measurement QTL GWAS741911 (human)1e-16alcohol consumption measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
407275712GWAS924688_Htriglyceride measurement QTL GWAS924688 (human)3e-92triglyceride measurementblood triglyceride level (CMO:0000118)81995804519958046Human
407083215GWAS732191_Halcohol consumption measurement, high density lipoprotein cholesterol measurement QTL GWAS732191 (human)7e-12alcohol consumption measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
407279190GWAS928166_Hhigh density lipoprotein cholesterol measurement QTL GWAS928166 (human)8e-16high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
407080279GWAS729255_Halcohol drinking, high density lipoprotein cholesterol measurement QTL GWAS729255 (human)3e-225alcohol drinking, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
407073878GWAS722854_Halcohol drinking, high density lipoprotein cholesterol measurement QTL GWAS722854 (human)2e-17alcohol drinking, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
407093205GWAS742181_Halcohol consumption measurement, high density lipoprotein cholesterol measurement QTL GWAS742181 (human)6e-299alcohol consumption measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
407279184GWAS928160_Hhigh density lipoprotein cholesterol measurement QTL GWAS928160 (human)4e-166high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
407116124GWAS765100_Htriglyceride measurement, alcohol consumption measurement QTL GWAS765100 (human)9e-136triglyceride measurement, alcohol consumption measurementethanol drink intake rate (CMO:0001407)81995804519958046Human
407114973GWAS763949_Htriglyceride measurement, alcohol consumption measurement QTL GWAS763949 (human)5e-16triglyceride measurement, alcohol consumption measurementethanol drink intake rate (CMO:0001407)81995804519958046Human
407275610GWAS924586_Hhigh density lipoprotein cholesterol measurement QTL GWAS924586 (human)5e-46high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
407148644GWAS797620_Hesterified cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS797620 (human)6e-14esterified cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
407072227GWAS721203_Hhigh density lipoprotein cholesterol measurement QTL GWAS721203 (human)1e-65high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
1298482BP2_HBlood pressure QTL 2 (human)1.8Blood pressurediastolic8695325632953256Human
407148647GWAS797623_Hfree cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS797623 (human)5e-14free cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
407148649GWAS797625_Hlipid measurement, high density lipoprotein cholesterol measurement QTL GWAS797625 (human)2e-13high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
407081581GWAS730557_Hhigh density lipoprotein cholesterol measurement QTL GWAS730557 (human)4e-131high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
407278965GWAS927941_Htriglyceride measurement QTL GWAS927941 (human)3e-195triglyceride measurementblood triglyceride level (CMO:0000118)81995804519958046Human
407073910GWAS722886_Htriglyceride measurement, alcohol drinking QTL GWAS722886 (human)4e-16triglyceride measurement, alcohol drinkingblood triglyceride level (CMO:0000118)81995804519958046Human
407073140GWAS722116_Hhigh density lipoprotein cholesterol measurement QTL GWAS722116 (human)1e-10high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
1558703SCL6_HSerum cholesterol level QTL 1 (human)1.2Lipid levelHDL cholesterol81246863538468635Human
407151097GWAS800073_Hvery low density lipoprotein cholesterol measurement, lipid measurement QTL GWAS800073 (human)3e-08very low density lipoprotein cholesterol measurement, lipid measurementblood lipid measurement (CMO:0000050)81995804519958046Human
407071618GWAS720594_Htriglyceride measurement, alcohol drinking QTL GWAS720594 (human)5e-137triglyceride measurement, alcohol drinkingblood triglyceride level (CMO:0000118)81995804519958046Human
407091842GWAS740818_Htriglyceride measurement QTL GWAS740818 (human)2e-10triglyceride measurementblood triglyceride level (CMO:0000118)81995804519958046Human
407091846GWAS740822_Htriglyceride measurement QTL GWAS740822 (human)3e-91triglyceride measurementblood triglyceride level (CMO:0000118)81995804519958046Human
407276291GWAS925267_Htriglyceride measurement QTL GWAS925267 (human)4e-15triglyceride measurementblood triglyceride level (CMO:0000118)81995804519958046Human
407080595GWAS729571_Halcohol drinking, high density lipoprotein cholesterol measurement QTL GWAS729571 (human)3e-13phospholipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
407275285GWAS924261_Hhigh density lipoprotein cholesterol measurement QTL GWAS924261 (human)8e-10high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
407115920GWAS764896_Htriglyceride measurement, alcohol consumption measurement QTL GWAS764896 (human)9e-11triglyceride measurement, alcohol consumption measurementethanol drink intake rate (CMO:0001407)81995804519958046Human
407150879GWAS799855_Hhigh density lipoprotein cholesterol measurement QTL GWAS799855 (human)1e-13esterified cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
407080856GWAS729832_Halcohol drinking, high density lipoprotein cholesterol measurement QTL GWAS729832 (human)2e-79alcohol drinking, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
407092383GWAS741359_Htriglyceride measurement QTL GWAS741359 (human)6e-158triglyceride measurementblood triglyceride level (CMO:0000118)81995804519958046Human
407071390GWAS720366_Htriglyceride measurement, alcohol drinking QTL GWAS720366 (human)5e-13lipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
407092380GWAS741356_Htriglyceride measurement QTL GWAS741356 (human)3e-09triglyceride measurementblood triglyceride level (CMO:0000118)81995804519958046Human
407070498GWAS719474_Htriglyceride measurement, alcohol drinking QTL GWAS719474 (human)1e-215triglyceride measurement, alcohol drinkingblood triglyceride level (CMO:0000118)81995804519958046Human
407095586GWAS744562_Halcohol consumption measurement, high density lipoprotein cholesterol measurement QTL GWAS744562 (human)8e-216alcohol consumption measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
407278503GWAS927479_Htriglyceride measurement QTL GWAS927479 (human)1e-08triglyceride measurementblood triglyceride level (CMO:0000118)81995804519958046Human
407279278GWAS928254_Hhigh density lipoprotein cholesterol measurement QTL GWAS928254 (human)4e-105high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
407150893GWAS799869_Hfree cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS799869 (human)7e-14free cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
407277487GWAS926463_Htriglyceride measurement QTL GWAS926463 (human)9e-97triglyceride measurementblood triglyceride level (CMO:0000118)81995804519958046Human
407082153GWAS731129_Hhigh density lipoprotein cholesterol measurement QTL GWAS731129 (human)4e-50high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
407152681GWAS801657_Hphospholipid measurement, high density lipoprotein cholesterol measurement QTL GWAS801657 (human)1e-12phospholipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
407115177GWAS764153_Htriglyceride measurement, alcohol consumption measurement QTL GWAS764153 (human)4e-200triglyceride measurement, alcohol consumption measurementethanol drink intake rate (CMO:0001407)81995804519958046Human
407360680GWAS1009656_Hdrug use measurement QTL GWAS1009656 (human)2e-08drug use measurement81995804519958046Human
407082679GWAS731655_Hhigh density lipoprotein cholesterol measurement QTL GWAS731655 (human)2e-12high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
407151165GWAS800141_Hhigh density lipoprotein cholesterol measurement QTL GWAS800141 (human)8e-13high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81995804519958046Human
407116477GWAS765453_Htriglyceride measurement, alcohol consumption measurement QTL GWAS765453 (human)2e-198triglyceride measurement, alcohol consumption measurementethanol drink intake rate (CMO:0001407)81995804519958046Human
407070521GWAS719497_Htriglyceride measurement, alcohol drinking QTL GWAS719497 (human)9e-203triglyceride measurement, alcohol drinkingblood triglyceride level (CMO:0000118)81995804519958046Human
407095864GWAS744840_Htriglyceride measurement QTL GWAS744840 (human)6e-59triglyceride measurementblood triglyceride level (CMO:0000118)81995804519958046Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS719474_H GCST008083 Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df) 56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers G NR 1E-215 215 rs287 N/A triglyceride measurement (EFO:0004530)
alcohol drinking (EFO:0004329)
 PMID:30698716
GWAS719497_H GCST008083 Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df) 56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers G NR 9E-203 202.046 rs287 N/A triglyceride measurement (EFO:0004530)
alcohol drinking (EFO:0004329)
 PMID:30698716
GWAS720366_H GCST008083 Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df) 56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers G NR 5E-13 12.302 rs287 N/A triglyceride measurement (EFO:0004530)
alcohol drinking (EFO:0004329)
 PMID:30698716
GWAS720594_H GCST008083 Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df) 56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers G NR 5E-137 136.302 rs287 N/A triglyceride measurement (EFO:0004530)
alcohol drinking (EFO:0004329)
 PMID:30698716
GWAS721203_H GCST008070 HDL cholesterol levels 89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals G NR 1E-65 65 rs287 0.0309 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS722116_H GCST008070 HDL cholesterol levels 89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals G NR 1E-10 10 rs287 0.02344 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS722854_H GCST008084 HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df) 56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers G NR 2E-17 16.699 rs287 N/A alcohol drinking (EFO:0004329)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS722886_H GCST008083 Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df) 56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers G NR 4E-16 15.398 rs287 N/A triglyceride measurement (EFO:0004530)
alcohol drinking (EFO:0004329)
 PMID:30698716
GWAS729255_H GCST008084 HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df) 56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers G NR 3E-225 224.523 rs287 N/A alcohol drinking (EFO:0004329)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS729571_H GCST008084 HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df) 56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers G NR 3E-13 12.523 rs287 N/A alcohol drinking (EFO:0004329)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS729832_H GCST008084 HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df) 56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers G NR 2E-79 78.699 rs287 N/A alcohol drinking (EFO:0004329)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS730557_H GCST008070 HDL cholesterol levels 89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals G NR 4E-131 130.398 rs287 0.0265 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS731129_H GCST008070 HDL cholesterol levels 89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals G NR 4E-50 49.398 rs287 0.0238 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS731655_H GCST008070 HDL cholesterol levels 89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals G NR 2E-12 11.699 rs287 0.03143 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS732191_H GCST008075 HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df) 44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers G NR 7E-12 11.155 rs287 N/A alcohol consumption measurement (EFO:0007878)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS740818_H GCST008076 Triglyceride levels 89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals G NR 2E-10 9.699 rs287 0.044 triglyceride measurement (EFO:0004530)
 PMID:30698716
GWAS740822_H GCST008076 Triglyceride levels 89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals G NR 3E-91 90.523 rs287 0.068 triglyceride measurement (EFO:0004530)
 PMID:30698716
GWAS741356_H GCST008076 Triglyceride levels 89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals G NR 3E-9 8.523 rs287 0.056 triglyceride measurement (EFO:0004530)
 PMID:30698716
GWAS741359_H GCST008076 Triglyceride levels 89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals G NR 6E-158 157.222 rs287 0.063 triglyceride measurement (EFO:0004530)
 PMID:30698716
GWAS741911_H GCST008075 HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df) 44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers G NR 1E-16 16 rs287 N/A alcohol consumption measurement (EFO:0007878)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS742181_H GCST008075 HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df) 44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers G NR 6E-299 298.222 rs287 N/A alcohol consumption measurement (EFO:0007878)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS742929_H GCST008075 HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df) 44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers G NR 3E-69 68.523 rs287 N/A alcohol consumption measurement (EFO:0007878)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS744562_H GCST008075 HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df) 44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers G NR 8E-216 215.097 rs287 N/A alcohol consumption measurement (EFO:0007878)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS744840_H GCST008076 Triglyceride levels 89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals G NR 6E-59 58.222 rs287 0.065 triglyceride measurement (EFO:0004530)
 PMID:30698716
GWAS763949_H GCST008074 Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df) 44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers G NR 5E-16 15.302 rs287 N/A triglyceride measurement (EFO:0004530)
alcohol consumption measurement (EFO:0007878)
 PMID:30698716
GWAS764153_H GCST008074 Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df) 44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers G NR 4E-200 199.398 rs287 N/A triglyceride measurement (EFO:0004530)
alcohol consumption measurement (EFO:0007878)
 PMID:30698716
GWAS764896_H GCST008074 Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df) 44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers G NR 9E-11 10.046 rs287 N/A triglyceride measurement (EFO:0004530)
alcohol consumption measurement (EFO:0007878)
 PMID:30698716
GWAS765100_H GCST008074 Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df) 44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers G NR 9E-136 135.046 rs287 N/A triglyceride measurement (EFO:0004530)
alcohol consumption measurement (EFO:0007878)
 PMID:30698716
GWAS765453_H GCST008074 Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df) 44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers G NR 2E-198 197.699 rs287 N/A triglyceride measurement (EFO:0004530)
alcohol consumption measurement (EFO:0007878)
 PMID:30698716
GWAS924261_H GCST008085 HDL cholesterol levels in current drinkers 56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals G NR 8E-10 9.097 rs287 0.019 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS924586_H GCST008085 HDL cholesterol levels in current drinkers 56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals G NR 5E-46 45.302 rs287 0.022 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS924688_H GCST008087 Triglyceride levels in current drinkers 56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals G NR 3E-92 91.523 rs287 0.066 triglyceride measurement (EFO:0004530)
 PMID:30698716
GWAS925267_H GCST008087 Triglyceride levels in current drinkers 56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals G NR 4E-15 14.398 rs287 0.06 triglyceride measurement (EFO:0004530)
 PMID:30698716
GWAS926463_H GCST008087 Triglyceride levels in current drinkers 56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals G NR 9E-97 96.046 rs287 0.061 triglyceride measurement (EFO:0004530)
 PMID:30698716
GWAS927479_H GCST008087 Triglyceride levels in current drinkers 56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals G NR 1E-8 8 rs287 0.032 triglyceride measurement (EFO:0004530)
 PMID:30698716
GWAS927941_H GCST008087 Triglyceride levels in current drinkers 56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals G NR 3E-195 194.523 rs287 0.06 triglyceride measurement (EFO:0004530)
 PMID:30698716
GWAS928160_H GCST008085 HDL cholesterol levels in current drinkers 56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals G NR 4E-166 165.398 rs287 0.025 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS928166_H GCST008085 HDL cholesterol levels in current drinkers 56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals G NR 8E-16 15.097 rs287 0.029 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS928254_H GCST008085 HDL cholesterol levels in current drinkers 56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals G NR 4E-105 104.398 rs287 0.029 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS1009656_H GCST90429009 Current medication use (UKB data field 20003) 335,744 British ancestry individuals ? 0.754997 2E-8 7.699 rs287 0.0412675 drug use measurement (EFO:0007010)
 PMID:38541061
None Available GCST90091682 Postprandial free cholesterol in large HDL null G 0.264826141 5E-14 13.302 rs287 0.191966 free cholesterol measurement (EFO:0008591)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091683 Postprandial total lipids in large HDL null G 0.264826141 2E-13 12.699 rs287 0.187787 lipid measurement (EFO:0004529)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091684 Postprandial large HDL particle concentration null G 0.264826141 2E-13 12.699 rs287 0.186751 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091685 Postprandial phospholipid levels in large HDL null G 0.264826141 3E-13 12.523 rs287 0.18603 phospholipid measurement (EFO:0004639)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091623 Fasting free cholesterol in very large HDL null G 0.261861888 1E-9 9 rs287 0.146342 free cholesterol measurement (EFO:0008591)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091778 Postprandial total lipids in very small VLDL null G 0.259944329 3E-8 7.523 rs287 0.136962 very low density lipoprotein cholesterol measurement (EFO:0008317)
lipid measurement (EFO:0004529)
 PMID:34610981
None Available GCST90091541 Fasting cholesterol esters in large HDL null G 0.263755855 1E-13 13 rs287 0.178459 esterified cholesterol measurement (EFO:0008589)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091540 Fasting total cholesterol in large HDL null G 0.263755855 1E-13 13 rs287 0.178737 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091542 Fasting free cholesterol in large HDL null G 0.263755855 7E-14 13.155 rs287 0.179991 free cholesterol measurement (EFO:0008591)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091543 Fasting total lipids in large HDL null G 0.263755855 5E-13 12.302 rs287 0.173903 lipid measurement (EFO:0004529)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091544 Fasting large HDL particle concentration null G 0.263755855 8E-13 12.097 rs287 0.172545 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091680 Postprandial total cholesterol in large HDL null G 0.264826141 6E-14 13.222 rs287 0.191153 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091681 Postprandial cholesterol esters in large HDL null G 0.264826141 6E-14 13.222 rs287 0.191038 esterified cholesterol measurement (EFO:0008589)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091545 Fasting phospholipid levels in large HDL null G 0.263755855 1E-12 12 rs287 0.171442 phospholipid measurement (EFO:0004639)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
Database Acc Id Source(s)
GWAS Catalog GCST008085 GWAS Catalog

RGD Curation Notes
Note Type Note Reference