GWAS916239_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS916239_H (amino acid measurement QTL GWAS916239 (human)) Homo sapiens

Symbol: GWAS916239_H
Name: amino acid measurement QTL GWAS916239 (human)
RGD ID: 407267263
Trait: amino acid measurement
LOD Score: Not Available
P Value: 2.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381557,063,162 - 57,063,163RGD_MAPPER_PIPELINEGRCh38
GRCh371557,355,360 - 57,355,361RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS916239_HHumanamino acid measurement  IAGPrs4494480405850206 GWAS_CATALOGPMID:31882771
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
731955TCF12transcription factor 12155691809057291310Human

Position Markers

Peak: (rs4494480)
Human AssemblyChrPosition (strand)Source
GRCh381557,063,162 - 57,063,163RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407267263GWAS916239_Hamino acid measurement QTL GWAS916239 (human)0.000002amino acid measurement155706316257063163Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS916239_H GCST90133530 4-guanidinobutanoate levels in elite athletes 490 individuals ? NR 0.000002 5.699 rs4494480 0.8874234 amino acid measurement (EFO:0005134)
 PMID:31882771
Database Acc Id Source(s)
GWAS Catalog GCST90133530 GWAS Catalog

RGD Curation Notes
Note Type Note Reference