GWAS913019_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS913019_H (total cortical area measurement QTL GWAS913019 (human)) Homo sapiens

Symbol: GWAS913019_H
Name: total cortical area measurement QTL GWAS913019 (human)
RGD ID: 407264043
Trait: total cortical area measurement
LOD Score: Not Available
P Value: 2.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381539,339,570 - 39,339,571RGD_MAPPER_PIPELINEGRCh38
GRCh371539,631,771 - 39,631,772RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS913019_HHumantotal cortical area measurement  IAGPrs11639391405850206 GWAS_CATALOGPMID:33875891
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
38627269LOC105370777uncharacterized LOC105370777153886480639421060Human

Position Markers

Peak: (rs11639391)
Human AssemblyChrPosition (strand)Source
GRCh381539,339,570 - 39,339,571RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
407262212GWAS911188_Hbrain volume measurement QTL GWAS911188 (human)2e-26brain volume measurementbrain morphological measurement (CMO:0000136)153933957039339571Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
407264043GWAS913019_Htotal cortical area measurement QTL GWAS913019 (human)2e-11total cortical area measurement153933957039339571Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS911188_H GCST90002831 aparc-Desikan rh volume supramarginal 21,282 British ancestry individuals T 0.089 2E-26 25.699 rs11639391 0.181 brain volume measurement (EFO:0006930)
 PMID:33875891
GWAS913019_H GCST90003225 BA-exvivo rh area BA4a 21,281 British ancestry individuals T 0.089 2E-11 10.699 rs11639391 0.115 total cortical area measurement (EFO:0008381)
 PMID:33875891
Database Acc Id Source(s)
GWAS Catalog GCST90003225 GWAS Catalog

RGD Curation Notes
Note Type Note Reference