GWAS907697_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS907697_H (myocardial infarction QTL GWAS907697 (human)) Homo sapiens

Symbol: GWAS907697_H
Name: myocardial infarction QTL GWAS907697 (human)
RGD ID: 407258721
Trait: myocardial infarction
LOD Score: Not Available
P Value: 4.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38116,412,260 - 16,412,261RGD_MAPPER_PIPELINEGRCh38
GRCh37116,738,755 - 16,738,756RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1602628SPATA21spermatogenesis associated 2111639567716437842Human

Position Markers

Peak: (rs12135288)
Human AssemblyChrPosition (strand)Source
GRCh38116,412,260 - 16,412,261RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407258721GWAS907697_Hmyocardial infarction QTL GWAS907697 (human)0.000004myocardial infarction11641226016412261Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS907697_H GCST90432175 Myocardial infarction 3,950 Saudi Arabian ancestry cases, 2,324 Saudi Arabian ancestry controls, 56,278 European and unknown ancestry cases, 577,716 European and unknown ancestry controls ? NR 0.000004 5.398 rs12135288 0.965 myocardial infarction (EFO:0000612)
 PMID:38072966
Database Acc Id Source(s)
GWAS Catalog GCST90432175 GWAS Catalog

RGD Curation Notes
Note Type Note Reference