GWAS904826_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS904826_H (stomach polyp QTL GWAS904826 (human)) Homo sapiens

Symbol: GWAS904826_H
Name: stomach polyp QTL GWAS904826 (human)
RGD ID: 407255850
Trait: stomach polyp
LOD Score: Not Available
P Value: 4.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381848,927,384 - 48,927,385RGD_MAPPER_PIPELINEGRCh38
GRCh371846,453,754 - 46,453,755RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS904826_HHumanstomach polyp  IAGPrs35352860405850206 GWAS_CATALOGPMID:37965154
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1344957SMAD7SMAD family member 7184891985348950965Human

Position Markers

Peak: (rs35352860)
Human AssemblyChrPosition (strand)Source
GRCh381848,927,384 - 48,927,385RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407255850GWAS904826_Hstomach polyp QTL GWAS904826 (human)4e-10stomach polyp184892738448927385Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS904826_H GCST90432135 ICD10 K31.7: Polyp of stomach and duodenum 116,382 European ancestry cases, 213,325 European ancestry controls ? NR 4E-10 9.398 rs35352860 0.93 PMID:37965154
Database Acc Id Source(s)
GWAS Catalog GCST90432135 GWAS Catalog

RGD Curation Notes
Note Type Note Reference