GWAS895699_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS895699_H (serum lipopolysaccharide activity QTL GWAS895699 (human)) Homo sapiens

Symbol: GWAS895699_H
Name: serum lipopolysaccharide activity QTL GWAS895699 (human)
RGD ID: 407246723
Trait: serum lipopolysaccharide activity
LOD Score: Not Available
P Value: 3.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,378,979 - 58,378,980RGD_MAPPER_PIPELINEGRCh38
GRCh371558,671,178 - 58,671,179RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS895699_HHumanserum lipopolysaccharide activity  IAGPrs10152355405850206 GWAS_CATALOGPMID:34668383
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs10152355)
Human AssemblyChrPosition (strand)Source
GRCh381558,378,979 - 58,378,980RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407246723GWAS895699_Hserum lipopolysaccharide activity QTL GWAS895699 (human)3e-09serum lipopolysaccharide activity155837897958378980Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS895699_H GCST90032674 Serum lipopolysaccharide activity 11,296 European ancestry individuals C 0.5389 3E-9 8.523 rs10152355 0.0835 serum lipopolysaccharide activity (EFO:0600064)
 PMID:34668383
Database Acc Id Source(s)
GWAS Catalog GCST90032674 GWAS Catalog

RGD Curation Notes
Note Type Note Reference