GWAS887218_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS887218_H (blood protein measurement QTL GWAS887218 (human)) Homo sapiens

Symbol: GWAS887218_H
Name: blood protein measurement QTL GWAS887218 (human)
RGD ID: 407238242
Trait: blood protein measurement
Measurement Type: blood protein measurement   (CMO:0000028)    
LOD Score: Not Available
P Value: 7.0E-45
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3816,344,239 - 6,344,240RGD_MAPPER_PIPELINEGRCh38
GRCh3716,404,299 - 6,404,300RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS887218_HHumanblood protein measurement  IAGPrs114321116405850206Based on the EFO term IDGWAS_CATALOGPMID:38412862

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS887218_HHumanblood protein measurement  IAGPrs114321116405850206 GWAS_CATALOGPMID:38412862
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
733878ACOT7acyl-CoA thioesterase 7162642726393767Human

Position Markers

Peak: (rs114321116)
Human AssemblyChrPosition (strand)Source
GRCh3816,344,239 - 6,344,240RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
407238242GWAS887218_Hblood protein measurement QTL GWAS887218 (human)7e-45blood protein measurementblood protein measurement (CMO:0000028)163442396344240Human
407098746GWAS747722_Hblood protein measurement QTL GWAS747722 (human)4e-36blood protein measurementblood protein measurement (CMO:0000028)163442396344240Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
407109658GWAS758634_Hblood protein measurement QTL GWAS758634 (human)1e-44blood protein measurementblood protein measurement (CMO:0000028)163442396344240Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS747722_H GCST90314839 FKBP4/KYAT1 protein level ratio 43,509 European ancestry individuals ? NR 4E-36 35.398 rs114321116 0.440628 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS758634_H GCST90315263 KYAT1/QDPR protein level ratio 43,509 European ancestry individuals ? NR 1E-44 44 rs114321116 0.487583 blood protein measurement (EFO:0007937)
 PMID:38412862
None Available GCST90315262 KYAT1/PLPBP protein level ratio 43,509 European ancestry individuals ? NR 1E-44 44 rs114321116 0.485757 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS887218_H GCST90314938 GLOD4/KYAT1 protein level ratio 43,509 European ancestry individuals ? NR 7E-45 44.155 rs114321116 0.492426 blood protein measurement (EFO:0007937)
 PMID:38412862
Database Acc Id Source(s)
GWAS Catalog GCST90314938 GWAS Catalog

RGD Curation Notes
Note Type Note Reference