GWAS881761_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS881761_H (bone density QTL GWAS881761 (human)) Homo sapiens

Symbol: GWAS881761_H
Name: bone density QTL GWAS881761 (human)
RGD ID: 407232785
Trait: bone mineral mass   (VT:0005007)    
Measurement Type: bone mineral density   (CMO:0001226)    
LOD Score: Not Available
P Value: 6.0E-80
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381551,498,480 - 51,498,481RGD_MAPPER_PIPELINEGRCh38
GRCh371551,790,677 - 51,790,678RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS881761_HHumanbone mineral density  IAGPrs117042600405850206Based on the EFO term IDGWAS_CATALOGPMID:37500982

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS881761_HHumanbone mineral mass  IAGPrs117042600405850206Based on the EFO term IDGWAS_CATALOGPMID:37500982

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS881761_HHumanbone density  IAGPrs117042600405850206 GWAS_CATALOGPMID:37500982
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1347338DMXL2Dmx like 2155144779151622771Human

Position Markers

Peak: (rs117042600)
Human AssemblyChrPosition (strand)Source
GRCh381551,498,480 - 51,498,481RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
407232785GWAS881761_Hbone density QTL GWAS881761 (human)6e-80bone mineral mass (VT:0005007)bone mineral density (CMO:0001226)155149848051498481Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS881761_H GCST90321120 Bone mineral density mean 5,862 South Asian ancestry individuals ? NR 6E-80 79.222 rs117042600 N/A bone density (EFO:0003923)
PMID:37500982
Database Acc Id Source(s)
GWAS Catalog GCST90321120 GWAS Catalog

RGD Curation Notes
Note Type Note Reference