GWAS880801_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS880801_H (childhood trauma measurement, alcohol consumption measurement QTL GWAS880801 (human)) Homo sapiens

Symbol: GWAS880801_H
Name: childhood trauma measurement, alcohol consumption measurement QTL GWAS880801 (human)
RGD ID: 407231825
Trait: childhood trauma measurement, alcohol consumption measurement
Measurement Type: ethanol drink intake rate   (CMO:0001407)    
LOD Score: Not Available
P Value: 2.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382159,723,067 - 159,723,068RGD_MAPPER_PIPELINEGRCh38
GRCh372160,579,578 - 160,579,579RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS880801_HHumanethanol drink intake rate  IAGPrs115125730405850206Based on the EFO term IDGWAS_CATALOGPMID:34417442

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS880801_HHumanalcohol consumption measurement  IAGPrs115125730405850206 GWAS_CATALOGPMID:34417442
GWAS880801_HHumanchildhood trauma measurement  IAGPrs115125730405850206 GWAS_CATALOGPMID:34417442
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1603971MARCHF7membrane associated ring-CH-type finger 72159712506159771027Human

Position Markers

Peak: (rs115125730)
Human AssemblyChrPosition (strand)Source
GRCh382159,723,067 - 159,723,068RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407231825GWAS880801_Hchildhood trauma measurement, alcohol consumption measurement QTL GWAS880801 (human)2e-08childhood trauma measurement, alcohol consumption measurementethanol drink intake rate (CMO:0001407)2159723067159723068Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS880801_H GCST90032655 Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction 46,394 European ancestry individuals ? NR 2E-8 7.699 rs115125730 2.9686 childhood trauma measurement (EFO:0007979)
alcohol consumption measurement (EFO:0007878)
 PMID:34417442
Database Acc Id Source(s)
GWAS Catalog GCST90032655 GWAS Catalog

RGD Curation Notes
Note Type Note Reference