GWAS876313_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS876313_H (bone density QTL GWAS876313 (human)) Homo sapiens

Symbol: GWAS876313_H
Name: bone density QTL GWAS876313 (human)
RGD ID: 407227337
Trait: bone mineral mass   (VT:0005007)    
Measurement Type: bone mineral density   (CMO:0001226)    
LOD Score: Not Available
P Value: 1E-300
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381545,202,495 - 45,202,496RGD_MAPPER_PIPELINEGRCh38
GRCh371545,494,693 - 45,494,694RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS876313_HHumanbone mineral density  IAGPrs72724273405850206Based on the EFO term IDGWAS_CATALOGPMID:37500982

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS876313_HHumanbone mineral mass  IAGPrs72724273405850206Based on the EFO term IDGWAS_CATALOGPMID:37500982

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS876313_HHumanbone density  IAGPrs72724273405850206 GWAS_CATALOGPMID:37500982
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs72724273)
Human AssemblyChrPosition (strand)Source
GRCh381545,202,495 - 45,202,496RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
407227337GWAS876313_Hbone density QTL GWAS876313 (human)1e-300bone mineral mass (VT:0005007)bone mineral density (CMO:0001226)154520249545202496Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS876313_H GCST90321120 Bone mineral density mean 5,862 South Asian ancestry individuals ? NR 1E-300 300 rs72724273 N/A bone density (EFO:0003923)
 PMID:37500982
Database Acc Id Source(s)
GWAS Catalog GCST90321120 GWAS Catalog

RGD Curation Notes
Note Type Note Reference