GWAS871815_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS871815_H (lymphocyte count QTL GWAS871815 (human)) Homo sapiens

Symbol: GWAS871815_H
Name: lymphocyte count QTL GWAS871815 (human)
RGD ID: 407222839
Trait: lymphocyte count
Measurement Type: blood lymphocyte count   (CMO:0000031)    
LOD Score: Not Available
P Value: 8.0E-16
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382119,922,642 - 119,922,643RGD_MAPPER_PIPELINEGRCh38
GRCh372120,680,218 - 120,680,219RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS871815_HHumanblood lymphocyte count  IAGPrs77713896405850206Based on the EFO term IDGWAS_CATALOGPMID:32888493

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS871815_HHumanlymphocyte count  IAGPrs77713896405850206 GWAS_CATALOGPMID:32888493

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1316480PTPN4protein tyrosine phosphatase non-receptor type 42119759922119984899Human


Peak: (rs77713896)
Human AssemblyChrPosition (strand)Source
GRCh382119,922,642 - 119,922,643RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
407222839GWAS871815_Hlymphocyte count QTL GWAS871815 (human)8e-16lymphocyte countblood lymphocyte count (CMO:0000031)2119922642119922643Human
597295953GWAS1392027_Hlymphocyte count QTL GWAS1392027 (human)2e-10lymphocyte countblood lymphocyte count (CMO:0000031)2119922642119922643Human
407249882GWAS898858_Hlymphocyte count QTL GWAS898858 (human)2e-18lymphocyte countblood lymphocyte count (CMO:0000031)2119922642119922643Human
597082185GWAS1178259_Hlymphocyte count QTL GWAS1178259 (human)3e-16lymphocyte countblood lymphocyte count (CMO:0000031)2119922642119922643Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS871815_H GCST90002320 Lymphocyte count 643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals C 0.0591655 8E-16 15.097 rs77713896 N/A lymphocyte count (EFO:0004587)
 PMID:32888493
GWAS1178259_H GCST90002388 Lymphocyte count 408,112 British individuals C 0.061094 3E-16 15.523 rs77713896 0.03766278 lymphocyte count (EFO:0004587)
 PMID:32888494
GWAS898858_H GCST90002316 Lymphocyte count 524,923 European ancestry individuals C 0.061285 2E-18 17.699 rs77713896 0.034601 lymphocyte count (EFO:0004587)
 PMID:32888493
GWAS1392027_H GCST90018962 Lymphocyte count 349,856 European ancestry individuals, 95,717 East Asian ancestry individuals C NR 2E-10 9.699 rs77713896 0.0313 lymphocyte count (EFO:0004587)
 PMID:34594039
Database
Acc Id
Source(s)
GWAS Catalog GCST90002320 GWAS Catalog

Note Type Note Reference