GWAS870147_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS870147_H (protein measurement QTL GWAS870147 (human)) Homo sapiens

Symbol: GWAS870147_H
Name: protein measurement QTL GWAS870147 (human)
RGD ID: 407221171
Trait: protein measurement
LOD Score: Not Available
P Value: 3.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38113,527,394 - 13,527,395RGD_MAPPER_PIPELINEGRCh38
GRCh37113,853,889 - 13,853,890RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS870147_HHumanprotein measurement  IAGPrs1208944369405850206 GWAS_CATALOGPMID:32778093
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs1208944369)
Human AssemblyChrPosition (strand)Source
GRCh38113,527,394 - 13,527,395RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407221171GWAS870147_Hprotein measurement QTL GWAS870147 (human)3e-08protein measurement11352739413527395Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS870147_H GCST011427 Protein quantitative trait loci (liver) 172 European ancestry individuals, 29 Black individuals, 86 individuals T 0.01394 3E-8 7.523 rs1208944369 4.364 protein measurement (EFO:0004747)
 PMID:32778093
Database Acc Id Source(s)
GWAS Catalog GCST011427 GWAS Catalog

RGD Curation Notes
Note Type Note Reference