GWAS865955_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS865955_H (bone mineral content measurement QTL GWAS865955 (human)) Homo sapiens

Symbol: GWAS865955_H
Name: bone mineral content measurement QTL GWAS865955 (human)
RGD ID: 407216979
Trait: bone mineral content measurement
LOD Score: Not Available
P Value: 6.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381547,374,636 - 47,374,637RGD_MAPPER_PIPELINEGRCh38
GRCh371547,666,833 - 47,666,834RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS865955_HHumanbone mineral content measurement  IAGPrs281248405850206 GWAS_CATALOGPMID:31668963
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1605040SEMA6Dsemaphorin 6D154718408947774228Human

Position Markers

Peak: (rs281248)
Human AssemblyChrPosition (strand)Source
GRCh381547,374,636 - 47,374,637RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407216979GWAS865955_Hbone mineral content measurement QTL GWAS865955 (human)0.000006bone mineral content measurement154737463647374637Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS865955_H GCST010986 Hip bone mineral content accrual during adolescent growth spurt 125 women, 133 men A 0.32 0.000006 5.222 rs281248 0.8 bone mineral content measurement (EFO:0007621)
 PMID:31668963
Database Acc Id Source(s)
GWAS Catalog GCST010986 GWAS Catalog

RGD Curation Notes
Note Type Note Reference