GWAS864805_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS864805_H (blood protein measurement QTL GWAS864805 (human)) Homo sapiens

Symbol: GWAS864805_H
Name: blood protein measurement QTL GWAS864805 (human)
RGD ID: 407215829
Trait: blood protein measurement
Measurement Type: blood protein measurement   (CMO:0000028)    
LOD Score: Not Available
P Value: 5E-385
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382201,284,866 - 201,284,867RGD_MAPPER_PIPELINEGRCh38
GRCh372202,149,589 - 202,149,590RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS864805_HHumanblood protein measurement  IAGPrs1045485405850206Based on the EFO term IDGWAS_CATALOGPMID:38412862

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS864805_HHumanblood protein measurement  IAGPrs1045485405850206 GWAS_CATALOGPMID:38412862
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
730846CASP8caspase 82201233463201287711Human

Position Markers

Peak: (rs1045485)
Human AssemblyChrPosition (strand)Source
GRCh382201,284,866 - 201,284,867RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407212866GWAS861842_Hblood protein measurement QTL GWAS861842 (human)5e-550blood protein measurementblood protein measurement (CMO:0000028)2201284866201284867Human
407213164GWAS862140_Hblood protein measurement QTL GWAS862140 (human)9e-361blood protein measurementblood protein measurement (CMO:0000028)2201284866201284867Human
407213452GWAS862428_Hblood protein measurement QTL GWAS862428 (human)4e-328blood protein measurementblood protein measurement (CMO:0000028)2201284866201284867Human
1643254BW125_HBody Weight QTL 125 (human)1.450.005Body weightbody mass index2200715236226715236Human
2293458PRSTS291_HProstate tumor susceptibility QTL 291 (human)0.012Prostate tumor susceptibility2200715236226715236Human
407215829GWAS864805_Hblood protein measurement QTL GWAS864805 (human)5e-385blood protein measurementblood protein measurement (CMO:0000028)2201284866201284867Human
1643053BW117_HBody Weight QTL 117 (human)2.40.00044Body weight2200715236226715236Human
407215824GWAS864800_Hblood protein measurement QTL GWAS864800 (human)2e-367blood protein measurementblood protein measurement (CMO:0000028)2201284866201284867Human
407212861GWAS861837_Hblood protein measurement QTL GWAS861837 (human)6e-401blood protein measurementblood protein measurement (CMO:0000028)2201284866201284867Human
407215644GWAS864620_Hblood protein measurement QTL GWAS864620 (human)1e-491blood protein measurementblood protein measurement (CMO:0000028)2201284866201284867Human
407215839GWAS864815_Hblood protein measurement QTL GWAS864815 (human)2e-305blood protein measurementblood protein measurement (CMO:0000028)2201284866201284867Human
407213150GWAS862126_Hblood protein measurement QTL GWAS862126 (human)4e-525blood protein measurementblood protein measurement (CMO:0000028)2201284866201284867Human
407212414GWAS861390_Hblood protein measurement QTL GWAS861390 (human)4e-631blood protein measurementblood protein measurement (CMO:0000028)2201284866201284867Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS861390_H GCST90313649 CASP8/CIAPIN1 protein level ratio 43,509 European ancestry individuals ? NR 4E-631 630.398 rs1045485 0.526024 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS861837_H GCST90313651 CASP8/DDX58 protein level ratio 43,509 European ancestry individuals ? NR 6E-401 400.222 rs1045485 0.427691 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS861842_H GCST90313652 CASP8/INPP1 protein level ratio 43,509 European ancestry individuals ? NR 5E-550 549.302 rs1045485 0.4957 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS862126_H GCST90313657 CASP8/RILP protein level ratio 43,509 European ancestry individuals ? NR 4E-525 524.398 rs1045485 0.477259 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS862140_H GCST90313658 CASP8/SEPTIN9 protein level ratio 43,509 European ancestry individuals ? NR 9E-361 360.046 rs1045485 0.401 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS862428_H GCST90313659 CASP8/SERPINB1 protein level ratio 43,509 European ancestry individuals ? NR 4E-328 327.398 rs1045485 0.383574 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS864620_H GCST90313650 CASP8/DARS1 protein level ratio 43,509 European ancestry individuals ? NR 1E-491 491 rs1045485 0.469002 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS864800_H GCST90313653 CASP8/PFKFB2 protein level ratio 43,509 European ancestry individuals ? NR 2E-367 366.699 rs1045485 0.405712 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS864805_H GCST90313654 CASP8/PPP3R1 protein level ratio 43,509 European ancestry individuals ? NR 5E-385 384.302 rs1045485 0.417128 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS864815_H GCST90313655 CASP8/PRDX6 protein level ratio 43,509 European ancestry individuals ? NR 2E-305 304.699 rs1045485 0.364671 blood protein measurement (EFO:0007937)
 PMID:38412862
Database Acc Id Source(s)
GWAS Catalog GCST90313654 GWAS Catalog

RGD Curation Notes
Note Type Note Reference