GWAS863991_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS863991_H (cystatin C measurement QTL GWAS863991 (human)) Homo sapiens

Symbol: GWAS863991_H
Name: cystatin C measurement QTL GWAS863991 (human)
RGD ID: 407215015
Trait: cystatin C measurement
Measurement Type: blood cystatin C level   (CMO:0002777)    
LOD Score: Not Available
P Value: 2.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381557,544,593 - 57,544,594RGD_MAPPER_PIPELINEGRCh38
GRCh371557,836,791 - 57,836,792RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS863991_HHumanblood cystatin C level  IAGPrs772155859405850206Based on the EFO term IDGWAS_CATALOGPMID:34226706

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS863991_HHumancystatin C measurement  IAGPrs772155859405850206 GWAS_CATALOGPMID:34226706
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1353387CGNL1cingulin like 1155737650557550717Human

Position Markers

Peak: (rs772155859)
Human AssemblyChrPosition (strand)Source
GRCh381557,544,593 - 57,544,594RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407215015GWAS863991_Hcystatin C measurement QTL GWAS863991 (human)2e-10cystatin C measurementblood cystatin C level (CMO:0002777)155754459357544594Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS863991_H GCST90025945 Cystatin C levels 437,846 European ancestry individuals ? NR 2E-10 9.699 rs772155859 0.42929 cystatin C measurement (EFO:0004617)
 PMID:34226706
Database Acc Id Source(s)
GWAS Catalog GCST90025945 GWAS Catalog

RGD Curation Notes
Note Type Note Reference