GWAS859407_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS859407_H (body height QTL GWAS859407 (human)) Homo sapiens

Symbol: GWAS859407_H
Name: body height QTL GWAS859407 (human)
RGD ID: 407210431
Trait: body height   (VT:0001253)    
Measurement Type: body height   (CMO:0000106)    
LOD Score: Not Available
P Value: 4.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38358,045,473 - 58,045,474RGD_MAPPER_PIPELINEGRCh38
GRCh37358,031,200 - 58,031,201RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS859407_HHumanbody height  IAGPrs200396883405850206Based on the EFO term IDGWAS_CATALOGPMID:33713608

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS859407_HHumanbody height  IAGPrs200396883405850206Based on the EFO term IDGWAS_CATALOGPMID:33713608

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS859407_HHumanbody height  IAGPrs200396883405850206 GWAS_CATALOGPMID:33713608
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
body height  (IAGP)

Vertebrate Trait
body height  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1323621FLNBfilamin B35800842258172251Human

Position Markers

Peak: (rs200396883)
Human AssemblyChrPosition (strand)Source
GRCh38358,045,473 - 58,045,474RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298487BFD1_HBody fluid distribution QTL 1 (human)3.94Body fluid distributionimpedance ratio33638071262380712Human
407213507GWAS862483_Hbody height QTL GWAS862483 (human)0.000004body height (VT:0001253)body height (CMO:0000106)35804547358045474Human
1298489RA4_HRheumatoid arthritis QTL 4 (human)0.0283Joint/bone inflammationrheumatoid arthritis33638071262380712Human
407210431GWAS859407_Hbody height QTL GWAS859407 (human)4e-08body height (VT:0001253)body height (CMO:0000106)35804547358045474Human
1643509BW293_HBody Weight QTL 293 (human)1.42Body weightBMI33638071262380712Human
2289308BW392_HBody weight QTL 392 (human)1.42Body weightBMI33638071262380712Human
1331643COPD16_HChronic obstructive pulmonary disease QTL 16 (human)1.07Chronic airflow obstructionpost-BD FEV1 minus pre-BD FEV1/pre-BD FEV1 x 10034938065175380651Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS859407_H GCST90013466 Height 41,389 African ancestry individuals ? 0.83 4E-8 7.398 rs200396883 0.056 body height (EFO:0004339)
 PMID:33713608
GWAS862483_H GCST90013468 Height 25,369 African ancestry women ? 0.831 0.000004 5.398 rs200396883 0.059 body height (EFO:0004339)
 PMID:33713608
Database Acc Id Source(s)
GWAS Catalog GCST90013466 GWAS Catalog

RGD Curation Notes
Note Type Note Reference