GWAS854240_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS854240_H (total phospholipids in lipoprotein particles measurement QTL GWAS854240 (human)) Homo sapiens

Symbol: GWAS854240_H
Name: total phospholipids in lipoprotein particles measurement QTL GWAS854240 (human)
RGD ID: 407205264
Trait: total phospholipids in lipoprotein particles measurement
Measurement Type: blood intermediate density lipoprotein cholesterol level   (CMO:0001562)    
blood low density lipoprotein cholesterol level   (CMO:0000053)    
LOD Score: Not Available
P Value: 3.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381948,703,728 - 48,703,729RGD_MAPPER_PIPELINEGRCh38
GRCh371949,206,985 - 49,206,986RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS854240_HHumanblood intermediate density lipoprotein cholesterol level  IAGPrs602662405850206Based on the EFO term IDGWAS_CATALOGPMID:35213538
GWAS854240_HHumanblood low density lipoprotein cholesterol level  IAGPrs602662405850206Based on the EFO term IDGWAS_CATALOGPMID:35213538

Experimental Factor Annotations    Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
735387FUT2fucosyltransferase 2 (H blood group)194869597148705951Human
38660230LOC105447645uncharacterized LOC105447645194870245048703848Human

Position Markers

Peak: (rs602662)
Human AssemblyChrPosition (strand)Source
GRCh381948,703,728 - 48,703,729RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407384521GWAS1033497_Hblood protein measurement QTL GWAS1033497 (human)2e-97blood protein measurementblood protein measurement (CMO:0000028)194870372848703729Human
407354950GWAS1003926_Hfree cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS1003926 (human)4e-09free cholesterol measurement, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)194870372848703729Human
407376971GWAS1025947_Hvitamin B12 measurement QTL GWAS1025947 (human)2e-139vitamin B12 measurement194870372848703729Human
407382861GWAS1031837_Hblood protein measurement QTL GWAS1031837 (human)8e-16blood protein measurementblood protein measurement (CMO:0000028)194870372848703729Human
407353792GWAS1002768_Hlow density lipoprotein cholesterol measurement QTL GWAS1002768 (human)4e-12low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)194870372848703729Human
407120908GWAS769884_Hautoimmune thyroid disease, systemic lupus erythematosus, type 1 diabetes mellitus, ankylosing spondylitis, psoriasis, common variable immunodeficiency, celiac disease, ulcerative colitis, Crohn's disease, autoimmune disease, juvenile idiopathic arthritis QTL GWAS769884 (human)5e-08free cholesterol measurement, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)194870372848703729Human
407351310GWAS1000286_Htotal cholesterol measurement QTL GWAS1000286 (human)3e-13total cholesterol measurementblood lipid measurement (CMO:0000050)194870372848703729Human
407352142GWAS1001118_Htotal cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS1001118 (human)1e-12total cholesterol measurement, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)194870372848703729Human
407353740GWAS1002716_Hlow density lipoprotein cholesterol measurement QTL GWAS1002716 (human)6e-12low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)194870372848703729Human
407356812GWAS1005788_Hserine protease 27 measurement QTL GWAS1005788 (human)1e-14serine protease 27 measurement194870372848703729Human
407209550GWAS858526_Hprotein measurement QTL GWAS858526 (human)5e-14protein measurement194870372848703729Human
407379269GWAS1028245_Hblood protein measurement QTL GWAS1028245 (human)8e-27blood protein measurementblood protein measurement (CMO:0000028)194870372848703729Human
407087948GWAS736924_Hgut microbiome measurement QTL GWAS736924 (human)0.0000004gut microbiome measurement194870372848703729Human
407352840GWAS1001816_Hfree cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS1001816 (human)1e-10free cholesterol measurement, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)194870372848703729Human
407353623GWAS1002599_Hlow density lipoprotein cholesterol measurement, phospholipid measurement QTL GWAS1002599 (human)1e-09low density lipoprotein cholesterol measurement, phospholipid measurementblood low density lipoprotein cholesterol level (CMO:0000053)194870372848703729Human
1559110SCL22_HSerum cholesterol level QTL 22 (human)3.590.000241Lipid levelLDL cholesterol193190759457907594Human
407137301GWAS786277_Hvitamin B12 measurement QTL GWAS786277 (human)2e-15vitamin B12 measurement194870372848703729Human
407354005GWAS1002981_Hfree cholesterol measurement QTL GWAS1002981 (human)4e-15free cholesterol measurementblood cholesterol level (CMO:0002280)194870372848703729Human
407205264GWAS854240_Htotal phospholipids in lipoprotein particles measurement QTL GWAS854240 (human)3e-11intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)194870372848703729Human
407354129GWAS1003105_Hcholesteryl ester measurement, very low density lipoprotein cholesterol measurement QTL GWAS1003105 (human)2e-11blood lipid amount (VT:0003949)blood very low density lipoprotein cholesterol level (CMO:0000648)194870372848703729Human
407353628GWAS1002604_Hlow density lipoprotein cholesterol measurement, lipid measurement QTL GWAS1002604 (human)2e-12low density lipoprotein cholesterol measurement, lipid measurementblood lipid measurement (CMO:0000050)194870372848703729Human
1331657COPD9_HChronic obstructive pulmonary disease QTL 9 (human)1.94Chronic airflow obstructionpost-bronchodilator FEV1193102176057021760Human
407352538GWAS1001514_Hcholesteryl ester measurement, low density lipoprotein cholesterol measurement QTL GWAS1001514 (human)3e-12blood lipid amount (VT:0003949)blood low density lipoprotein cholesterol level (CMO:0000053)194870372848703729Human
407372566GWAS1021542_Hblood protein measurement QTL GWAS1021542 (human)7e-47blood protein measurementblood protein measurement (CMO:0000028)194870372848703729Human
407351077GWAS1000053_Hcholesteryl ester measurement, low density lipoprotein cholesterol measurement QTL GWAS1000053 (human)3e-10blood lipid amount (VT:0003949)blood lipid measurement (CMO:0000050)194870372848703729Human
407187878GWAS836854_Hprotein measurement QTL GWAS836854 (human)4e-17protein measurement194870372848703729Human
407370018GWAS1018994_Hblood protein measurement QTL GWAS1018994 (human)4e-26blood protein measurementblood protein measurement (CMO:0000028)194870372848703729Human
407351535GWAS1000511_Hcholesteryl ester measurement, intermediate density lipoprotein measurement QTL GWAS1000511 (human)1e-11blood lipid amount (VT:0003949)blood intermediate density lipoprotein cholesterol level (CMO:0001562)194870372848703729Human
406929576GWAS578552_Hvitamin B12 measurement QTL GWAS578552 (human)6e-13apolipoprotein B measurementblood apoliprotein B level (CMO:0000522)194870372848703729Human
407185775GWAS834751_Hprotein measurement QTL GWAS834751 (human)1e-25protein measurement194870372848703729Human
407127791GWAS776767_Hvitamin B12 measurement QTL GWAS776767 (human)3e-20vitamin B12 measurement194870372848703729Human
407357100GWAS1006076_Hlevel of intestinal alkaline phosphatase in blood serum QTL GWAS1006076 (human)1e-23level of intestinal alkaline phosphatase in blood serum194870372848703729Human
407354359GWAS1003335_Hlow density lipoprotein cholesterol measurement, lipid measurement QTL GWAS1003335 (human)2e-10low density lipoprotein cholesterol measurement, lipid measurementblood lipid measurement (CMO:0000050)194870372848703729Human
407352565GWAS1001541_Hremnant cholesterol measurement QTL GWAS1001541 (human)8e-14remnant cholesterol measurement194870372848703729Human
407354875GWAS1003851_Hcholesteryl ester measurement, low density lipoprotein cholesterol measurement QTL GWAS1003851 (human)8e-13blood lipid amount (VT:0003949)blood low density lipoprotein cholesterol level (CMO:0000053)194870372848703729Human
407370810GWAS1019786_Hblood protein measurement QTL GWAS1019786 (human)1e-81blood protein measurementblood protein measurement (CMO:0000028)194870372848703729Human
407353338GWAS1002314_Htotal cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS1002314 (human)6e-10total cholesterol measurement, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)194870372848703729Human
407354744GWAS1003720_Hlow density lipoprotein cholesterol measurement QTL GWAS1003720 (human)5e-11low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)194870372848703729Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS578552_H GCST004161 Vitamin B12 levels 1,001 Indo-European ancestry adults A NR 6E-13 12.222 rs602662 0.18 vitamin B12 measurement (EFO:0004620)
 PMID:28334792
GWAS736924_H GCST90011589 OTU97_27 (Bacteroides) prevalence 8,956 German ancestry individuals ? NR 4E-7 6.398 rs602662 0.1897172 gut microbiome measurement (EFO:0007874)
 PMID:33462482
GWAS769884_H GCST003097 Pediatric autoimmune diseases 97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123 European ancestry juvenile idiopathic arthritis cases, 1,922 European ancestry Crohn's disease cases, 10,718 European ancestry controls G 0.49 5E-8 7.302 rs602662 N/A autoimmune thyroid disease (EFO:0006812)
ankylosing spondylitis (EFO:0003898)
psoriasis (EFO:0000676)
celiac disease (EFO:0001060)
More... 		PMID:26301688
GWAS776767_H GCST000358 Folate pathway vitamin levels 2,934 European ancestry individuals A 0.53 3E-20 19.523 rs602662 49.77 vitamin B12 measurement (EFO:0004620)
 PMID:19303062
GWAS786277_H GCST000483 Folate pathway vitamin levels 3,305 European ancestry females, 1,458 European ancestry males ? 0.44 2E-15 14.699 rs602662 0.07 vitamin B12 measurement (EFO:0004620)
 PMID:19744961
GWAS834751_H GCST90248850 Pancreatic lipase-related protein 2 levels 10,708 European ancestry individuals A 0.51 1E-25 25 rs602662 0.144 protein measurement (EFO:0004747)
 PMID:34648354
GWAS836854_H GCST90249003 Prolactin-inducible protein levels 10,708 European ancestry individuals A 0.51 4E-17 16.398 rs602662 0.112 protein measurement (EFO:0004747)
 PMID:34648354
GWAS854240_H GCST90269508 Total phospholipids in lipoprotein particles (UKB data field 23411) 88,329 European ancestry individuals G 0.465583 3E-11 10.523 rs602662 0.0301398 total phospholipids in lipoprotein particles measurement (EFO:0022315)
 PMID:36764567
GWAS858526_H GCST90248540 Mucin-16 levels 10,708 European ancestry individuals A 0.51 5E-14 13.302 rs602662 0.098 protein measurement (EFO:0004747)
 PMID:34648354
GWAS1000053_H GCST90092958 Cholesteryl ester levels in small LDL 115,082 European ancestry individuals G 0.465629 3E-10 9.523 rs602662 0.0260331 cholesteryl ester measurement (EFO:0010351)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
None Available GCST90092809 Apolipoprotein B levels 115,082 European ancestry individuals G 0.465629 6E-13 12.222 rs602662 0.0297244 apolipoprotein B measurement (EFO:0004615)
 PMID:35213538
GWAS1000286_H GCST90092930 Total cholesterol minus HDL-C levels 115,082 European ancestry individuals G 0.465629 3E-13 12.523 rs602662 0.0299659 total cholesterol measurement (EFO:0004574)
 PMID:35213538
GWAS1000511_H GCST90092833 Cholesteryl ester levels in IDL 115,082 European ancestry individuals G 0.465629 1E-11 11 rs602662 0.0270389 cholesteryl ester measurement (EFO:0010351)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS1001118_H GCST90092856 Cholesterol levels in large LDL 115,082 European ancestry individuals G 0.465629 1E-12 12 rs602662 0.0289967 total cholesterol measurement (EFO:0004574)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1001514_H GCST90092884 Cholesteryl ester levels in LDL 115,082 European ancestry individuals G 0.465629 3E-12 11.523 rs602662 0.0286832 cholesteryl ester measurement (EFO:0010351)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1001541_H GCST90092943 Remnant cholesterol (non-HDL, non-LDL -cholesterol) 115,082 European ancestry individuals G 0.465629 8E-14 13.097 rs602662 0.0307096 remnant cholesterol measurement (EFO:0010815)
 PMID:35213538
GWAS1001816_H GCST90092885 Free cholesterol levels in LDL 115,082 European ancestry individuals G 0.465629 1E-10 10 rs602662 0.0263396 free cholesterol measurement (EFO:0008591)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1002314_H GCST90092956 Cholesterol levels in small LDL 115,082 European ancestry individuals G 0.465629 6E-10 9.222 rs602662 0.0256144 total cholesterol measurement (EFO:0004574)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
None Available GCST90092904 Cholesterol levels in medium LDL 115,082 European ancestry individuals G 0.465629 3E-10 9.523 rs602662 0.0260177 total cholesterol measurement (EFO:0004574)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1002599_H GCST90092912 Phospholipid levels in medium LDL 115,082 European ancestry individuals G 0.465629 1E-9 9 rs602662 0.0251064 low density lipoprotein cholesterol measurement (EFO:0004611)
phospholipid measurement (EFO:0004639)
 PMID:35213538
GWAS1002604_H GCST90092886 Total lipid levels in LDL 115,082 European ancestry individuals G 0.465629 2E-12 11.699 rs602662 0.0289459 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:35213538
None Available GCST90092887 Concentration of LDL particles 115,082 European ancestry individuals G 0.465629 1E-12 12 rs602662 0.029257 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
None Available GCST90092960 Free cholesterol levels in small LDL 115,082 European ancestry individuals G 0.465629 5E-8 7.302 rs602662 0.0224655 free cholesterol measurement (EFO:0008591)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1002716_H GCST90092883 LDL cholesterol levels 115,082 European ancestry individuals G 0.465629 6E-12 11.222 rs602662 0.028308 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1002768_H GCST90092863 Concentration of large LDL particles 115,082 European ancestry individuals G 0.465629 4E-12 11.398 rs602662 0.0285857 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
None Available GCST90092862 Total lipid levels in large LDL 115,082 European ancestry individuals G 0.465629 3E-13 12.523 rs602662 0.0299137 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:35213538
None Available GCST90092888 Phospholipid levels in LDL 115,082 European ancestry individuals G 0.465629 3E-11 10.523 rs602662 0.0274148 low density lipoprotein cholesterol measurement (EFO:0004611)
phospholipid measurement (EFO:0004639)
 PMID:35213538
None Available GCST90092962 Total lipid levels in small LDL 115,082 European ancestry individuals G 0.465629 3E-10 9.523 rs602662 0.0259552 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:35213538
GWAS1002981_H GCST90092988 Total free cholesterol levels 115,082 European ancestry individuals G 0.465629 4E-15 14.398 rs602662 0.0317011 free cholesterol measurement (EFO:0008591)
 PMID:35213538
GWAS1003105_H GCST90092918 Cholesteryl ester levels in medium VLDL 115,082 European ancestry individuals G 0.465629 2E-11 10.699 rs602662 0.02753 cholesteryl ester measurement (EFO:0010351)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
None Available GCST90092838 Concentration of IDL particles 115,082 European ancestry individuals G 0.465629 3E-11 10.523 rs602662 0.0272464 intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS1003335_H GCST90092910 Total lipid levels in medium LDL 115,082 European ancestry individuals G 0.465629 2E-10 9.699 rs602662 0.0263988 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:35213538
GWAS1003720_H GCST90092814 Clinical LDL cholesterol levels 115,082 European ancestry individuals G 0.465629 5E-11 10.302 rs602662 0.0269861 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1003851_H GCST90092858 Cholesteryl ester levels in large LDL 115,082 European ancestry individuals G 0.465629 8E-13 12.097 rs602662 0.0293429 cholesteryl ester measurement (EFO:0010351)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1003926_H GCST90092908 Free cholesterol levels in medium LDL 115,082 European ancestry individuals G 0.465629 4E-9 8.398 rs602662 0.0243617 free cholesterol measurement (EFO:0008591)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1005788_H GCST90234426 Serine protease 27 level in Chronic kidney disease with hypertension and no diabetes (15535_3) 466 African American individuals A 0.52 1E-14 14 rs602662 0.46 serine protease 27 measurement (EFO:0008280)
 PMID:35870639
GWAS1006076_H GCST90234705 Intestinal-type alkaline phosphatase level in Chronic kidney disease with hypertension and no diabetes (17441_4) 466 African American individuals A 0.52 1E-23 23 rs602662 0.58 PMID:35870639
GWAS1018994_H GCST90090427 Serum levels of protein GOLM1 5,362 Icelandic ancestry individuals G 0.3761 4E-26 25.398 rs602662 0.200625 blood protein measurement (EFO:0007937)
 PMID:35078996
GWAS1019786_H GCST90314204 CPA1/CTRC protein level ratio 43,509 European ancestry individuals ? NR 1E-81 81 rs602662 0.129603 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS1021542_H GCST90315937 TNFRSF1A/TNFRSF1B protein level ratio 43,509 European ancestry individuals ? NR 7E-47 46.155 rs602662 0.0990576 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS1025947_H GCST90277442 Vitamin B12 levels 38,229 Danish, Icelandic ancestry individuals A 0.596 2E-139 138.699 rs602662 N/A vitamin B12 measurement (EFO:0004620)
 PMID:23754956
GWAS1028245_H GCST90315653 PIK3IP1/TNFRSF1A protein level ratio 43,509 European ancestry individuals ? NR 8E-27 26.097 rs602662 0.0739144 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS1031837_H GCST90314211 CPB1/PRSS2 protein level ratio 43,509 European ancestry individuals ? NR 8E-16 15.097 rs602662 0.0551315 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS1033497_H GCST90314209 CPB1/CTRC protein level ratio 43,509 European ancestry individuals ? NR 2E-97 96.699 rs602662 0.141178 blood protein measurement (EFO:0007937)
 PMID:38412862
None Available GCST90320263 Human milk oligosaccharide concentration (2'-fucosyllactose) 764 European ancestry individuals, 48 South Asian ancestry individuals, 126 East Asian ancestry individuals, 26 African American or Afro-Caribbean individuals, 16 Other admixed ancestry and unknown ancestry individuals A NR 3E-174 173.523 rs602662 28.145 breast milk measurement (EFO:0009092)
 PMID:39232002
None Available GCST90320270 Human milk oligosaccharide concentration (disialyllacto-N-hexaose) 764 European ancestry individuals, 48 South Asian ancestry individuals, 126 East Asian ancestry individuals, 26 African American or Afro-Caribbean individuals, 16 Other admixed ancestry and unknown ancestry individuals A NR 6E-9 8.222 rs602662 5.828 breast milk measurement (EFO:0009092)
 PMID:39232002
None Available GCST90320274 Human milk oligosaccharide concentration (lacto-N-fucopentaose-I) 764 European ancestry individuals, 48 South Asian ancestry individuals, 126 East Asian ancestry individuals, 26 African American or Afro-Caribbean individuals, 16 Other admixed ancestry and unknown ancestry individuals A NR 2E-148 147.699 rs602662 25.949 breast milk measurement (EFO:0009092)
 PMID:39232002
None Available GCST90320284 Total concentration of 19 human milk oligosaccharides 764 European ancestry individuals, 48 South Asian ancestry individuals, 126 East Asian ancestry individuals, 26 African American or Afro-Caribbean individuals, 16 Other admixed ancestry and unknown ancestry individuals A NR 1E-109 109 rs602662 22.241 breast milk measurement (EFO:0009092)
 PMID:39232002
None Available GCST90320267 Human milk oligosaccharide concentration (difucosyllacto-N-hexaose) 764 European ancestry individuals, 48 South Asian ancestry individuals, 126 East Asian ancestry individuals, 26 African American or Afro-Caribbean individuals, 16 Other admixed ancestry and unknown ancestry individuals A NR 7E-29 28.155 rs602662 11.149 breast milk measurement (EFO:0009092)
 PMID:39232002
None Available GCST90320264 Human milk oligosaccharide concentration (3'-fucosyllactose) 764 European ancestry individuals, 48 South Asian ancestry individuals, 126 East Asian ancestry individuals, 26 African American or Afro-Caribbean individuals, 16 Other admixed ancestry and unknown ancestry individuals A NR 3E-43 42.523 rs602662 13.793 breast milk measurement (EFO:0009092)
 PMID:39232002
None Available GCST90320280 Human milk oligosaccharide concentration (sialyl-lacto-N-tetraose b) 764 European ancestry individuals, 48 South Asian ancestry individuals, 126 East Asian ancestry individuals, 26 African American or Afro-Caribbean individuals, 16 Other admixed ancestry and unknown ancestry individuals A NR 3E-36 35.523 rs602662 12.582 breast milk measurement (EFO:0009092)
 PMID:39232002
None Available GCST90320276 Human milk oligosaccharide concentration (lacto-N-fucopentaose-III) 764 European ancestry individuals, 48 South Asian ancestry individuals, 126 East Asian ancestry individuals, 26 African American or Afro-Caribbean individuals, 16 Other admixed ancestry and unknown ancestry individuals A NR 1E-33 33 rs602662 12.082 breast milk measurement (EFO:0009092)
 PMID:39232002
None Available GCST90320283 Human milk oligosaccharide concentration (Sialic acid-bound) 764 European ancestry individuals, 48 South Asian ancestry individuals, 126 East Asian ancestry individuals, 26 African American or Afro-Caribbean individuals, 16 Other admixed ancestry and unknown ancestry individuals A NR 3E-24 23.523 rs602662 10.161 breast milk measurement (EFO:0009092)
 PMID:39232002
None Available GCST90320272 Human milk oligosaccharide concentration (fucodisialyllacto-N-hexaose) 764 European ancestry individuals, 48 South Asian ancestry individuals, 126 East Asian ancestry individuals, 26 African American or Afro-Caribbean individuals, 16 Other admixed ancestry and unknown ancestry individuals A NR 7E-78 77.155 rs602662 18.683 breast milk measurement (EFO:0009092)
 PMID:39232002
None Available GCST90320282 Human milk oligosaccharide concentration (Fucose-bound) 764 European ancestry individuals, 48 South Asian ancestry individuals, 126 East Asian ancestry individuals, 26 African American or Afro-Caribbean individuals, 16 Other admixed ancestry and unknown ancestry individuals A NR 1E-147 147 rs602662 25.872 breast milk measurement (EFO:0009092)
 PMID:39232002
None Available GCST90320268 Human milk oligosaccharide concentration (difucosyllacto-N-tetrose) 764 European ancestry individuals, 48 South Asian ancestry individuals, 126 East Asian ancestry individuals, 26 African American or Afro-Caribbean individuals, 16 Other admixed ancestry and unknown ancestry individuals A NR 6E-33 32.222 rs602662 11.958 breast milk measurement (EFO:0009092)
 PMID:39232002
None Available GCST90320273 Human milk oligosaccharide concentration (fucosyllacto-N-hexaose) 764 European ancestry individuals, 48 South Asian ancestry individuals, 126 East Asian ancestry individuals, 26 African American or Afro-Caribbean individuals, 16 Other admixed ancestry and unknown ancestry individuals A NR 2E-12 11.699 rs602662 7.053 breast milk measurement (EFO:0009092)
 PMID:39232002
None Available GCST90320278 Human milk oligosaccharide concentration (lacto-N-tetrose) 764 European ancestry individuals, 48 South Asian ancestry individuals, 126 East Asian ancestry individuals, 26 African American or Afro-Caribbean individuals, 16 Other admixed ancestry and unknown ancestry individuals A NR 3E-29 28.523 rs602662 11.219 breast milk measurement (EFO:0009092)
 PMID:39232002
None Available GCST90320275 Human milk oligosaccharide concentration (lacto-N-fucopentaose-II) 764 European ancestry individuals, 48 South Asian ancestry individuals, 126 East Asian ancestry individuals, 26 African American or Afro-Caribbean individuals, 16 Other admixed ancestry and unknown ancestry individuals A NR 6E-111 110.222 rs602662 22.378 breast milk measurement (EFO:0009092)
 PMID:39232002
None Available GCST90320265 Human milk oligosaccharide concentration (3'-sialyllactose) 764 European ancestry individuals, 48 South Asian ancestry individuals, 126 East Asian ancestry individuals, 26 African American or Afro-Caribbean individuals, 16 Other admixed ancestry and unknown ancestry individuals A NR 2E-15 14.699 rs602662 7.952 breast milk measurement (EFO:0009092)
 PMID:39232002
None Available GCST90320269 Human milk oligosaccharide concentration (difucosyllactose) 764 European ancestry individuals, 48 South Asian ancestry individuals, 126 East Asian ancestry individuals, 26 African American or Afro-Caribbean individuals, 16 Other admixed ancestry and unknown ancestry individuals A NR 2E-104 103.699 rs602662 21.695 breast milk measurement (EFO:0009092)
 PMID:39232002
None Available GCST90320281 Human milk oligosaccharide concentration (sialyl-lacto-N-tetraose c) 764 European ancestry individuals, 48 South Asian ancestry individuals, 126 East Asian ancestry individuals, 26 African American or Afro-Caribbean individuals, 16 Other admixed ancestry and unknown ancestry individuals A NR 2E-17 16.699 rs602662 8.512 breast milk measurement (EFO:0009092)
 PMID:39232002
Database Acc Id Source(s)
GWAS Catalog GCST90092838 GWAS Catalog
  GCST90092888 GWAS Catalog
  GCST90269508 GWAS Catalog

RGD Curation Notes
Note Type Note Reference