GWAS847965_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS847965_H (phosphatidylethanolamine measurement QTL GWAS847965 (human)) Homo sapiens

Symbol: GWAS847965_H
Name: phosphatidylethanolamine measurement QTL GWAS847965 (human)
RGD ID: 407198989
Trait: phosphatidylethanolamine measurement
LOD Score: Not Available
P Value: 4.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,432,172 - 58,432,173RGD_MAPPER_PIPELINEGRCh38
GRCh371558,724,371 - 58,724,372RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS847965_HHumanphosphatidylethanolamine measurement  IAGPrs8192701405850206 GWAS_CATALOGPMID:35668104
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
736877LIPClipase C, hepatic type155843199158569844Human

Position Markers

Peak: (rs8192701)
Human AssemblyChrPosition (strand)Source
GRCh381558,432,172 - 58,432,173RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407191159GWAS840135_Hphosphatidylethanolamine measurement QTL GWAS840135 (human)6e-10phosphatidylethanolamine measurement155843217258432173Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407198989GWAS847965_Hphosphatidylethanolamine measurement QTL GWAS847965 (human)4e-11phosphatidylethanolamine measurement155843217258432173Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS840135_H GCST90060690 Phosphatidylethanolamine(36:4)_[M+H]1+ levels 5,662 Pakistani ancestry individuals C NR 6E-10 9.222 rs8192701 0.0797 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS847965_H GCST90024988 Phosphatidylethanolamine (18:1_22:6) (a) levels 6,057 European ancestry individuals T NR 4E-11 10.398 rs8192701 N/A phosphatidylethanolamine measurement (EFO:0010228)
 PMID:35668104
Database Acc Id Source(s)
GWAS Catalog GCST90024988 GWAS Catalog

RGD Curation Notes
Note Type Note Reference