GWAS843552_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS843552_H (phosphatidylcholine measurement QTL GWAS843552 (human)) Homo sapiens

Symbol: GWAS843552_H
Name: phosphatidylcholine measurement QTL GWAS843552 (human)
RGD ID: 407194576
Trait: phosphatidylcholine measurement
LOD Score: Not Available
P Value: 6.0E-34
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,408,112 - 58,408,113RGD_MAPPER_PIPELINEGRCh38
GRCh371558,700,311 - 58,700,312RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS843552_HHumanphosphatidylcholine measurement  IAGPrs17240869405850206 GWAS_CATALOGPMID:34503513
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs17240869)
Human AssemblyChrPosition (strand)Source
GRCh381558,408,112 - 58,408,113RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407175892GWAS824868_Hphosphatidylethanolamine measurement QTL GWAS824868 (human)2e-15phosphatidylethanolamine measurement155840811258408113Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407194576GWAS843552_Hphosphatidylcholine measurement QTL GWAS843552 (human)6e-34phosphatidylcholine measurement155840811258408113Human
407169987GWAS818963_Hphosphatidylethanolamine measurement QTL GWAS818963 (human)6e-35phosphatidylethanolamine measurement155840811258408113Human
407193394GWAS842370_Hphosphatidylcholine measurement QTL GWAS842370 (human)8e-43phosphatidylcholine measurement155840811258408113Human
407202594GWAS851570_Hphosphatidylcholine measurement QTL GWAS851570 (human)2e-18phosphatidylcholine measurement155840811258408113Human
407170012GWAS818988_Hphosphatidylethanolamine measurement QTL GWAS818988 (human)5e-22phosphatidylethanolamine measurement155840811258408113Human
407192077GWAS841053_Hphosphatidylcholine measurement QTL GWAS841053 (human)5e-39phosphatidylcholine measurement155840811258408113Human
407175388GWAS824364_Hphosphatidylethanolamine measurement QTL GWAS824364 (human)2e-39phosphatidylethanolamine measurement155840811258408113Human
407242333GWAS891309_Hphosphatidylethanolamine measurement QTL GWAS891309 (human)1e-18phosphatidylethanolamine measurement155840811258408113Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
407245352GWAS894328_Hphosphatidylcholine measurement QTL GWAS894328 (human)4e-38phosphatidylcholine measurement155840811258408113Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS818963_H GCST90060272 Phosphatidylethanolamine_36:4_[M-H]1- levels 13,814 British ancestry individuals C NR 6E-35 34.222 rs17240869 0.18453 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS818988_H GCST90060690 Phosphatidylethanolamine(36:4)_[M+H]1+ levels 5,662 Pakistani ancestry individuals C NR 5E-22 21.302 rs17240869 0.1022 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS824364_H GCST90060310 Phosphatidylethanolamine_38:6_[M-H]1- levels 13,814 British ancestry individuals C NR 2E-39 38.699 rs17240869 0.199003 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS824868_H GCST90060313 Phosphatidylethanolamine_38:5_[M-H]1- levels 13,814 British ancestry individuals C NR 2E-15 14.699 rs17240869 0.10376 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS841053_H GCST90060316 Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels 13,814 British ancestry individuals C NR 5E-39 38.302 rs17240869 0.196643 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS842370_H GCST90060273 Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels 13,814 British ancestry individuals C NR 8E-43 42.097 rs17240869 0.211544 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS843552_H GCST90060249 Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels 13,814 British ancestry individuals C NR 6E-34 33.222 rs17240869 0.191721 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS851570_H GCST90060371 Phosphatidylcholine_37:6_[M+H]1+/Phosphatidylethanolamine_40:6_[M+H]1+/Phosphatidate_42:7_[M+NH4]1+ levels 13,814 British ancestry individuals C NR 2E-18 17.699 rs17240869 0.159363 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS891309_H GCST90060247 Phosphatidylethanolamine_34:2_[M-H]1- levels 13,814 British ancestry individuals C NR 1E-18 18 rs17240869 0.132319 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
GWAS894328_H GCST90060312 Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels 13,814 British ancestry individuals C NR 4E-38 37.398 rs17240869 0.205178 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
Database Acc Id Source(s)
GWAS Catalog GCST90060249 GWAS Catalog

RGD Curation Notes
Note Type Note Reference