GWAS841568_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS841568_H (triglyceride measurement, high density lipoprotein cholesterol measurement QTL GWAS841568 (human)) Homo sapiens

Symbol: GWAS841568_H
Name: triglyceride measurement, high density lipoprotein cholesterol measurement QTL GWAS841568 (human)
RGD ID: 407192592
Trait: triglyceride measurement, high density lipoprotein cholesterol measurement
Measurement Type: blood high density lipoprotein cholesterol level   (CMO:0000052)    
blood triglyceride level   (CMO:0000118)    
LOD Score: Not Available
P Value: 1.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,214,259 - 58,214,260RGD_MAPPER_PIPELINEGRCh38
GRCh371558,506,458 - 58,506,459RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS841568_HHumanblood high density lipoprotein cholesterol level  IAGPrs186791139405850206Based on the EFO term IDGWAS_CATALOGPMID:35213538
GWAS841568_HHumanblood triglyceride level  IAGPrs186791139405850206Based on the EFO term IDGWAS_CATALOGPMID:35213538

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS841568_HHumanhigh density lipoprotein cholesterol measurement  IAGPrs186791139405850206 GWAS_CATALOGPMID:35213538
GWAS841568_HHumantriglyceride measurement  IAGPrs186791139405850206 GWAS_CATALOGPMID:35213538
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs186791139)
Human AssemblyChrPosition (strand)Source
GRCh381558,214,259 - 58,214,260RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407192592GWAS841568_Htriglyceride measurement, high density lipoprotein cholesterol measurement QTL GWAS841568 (human)1e-09triglyceride measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155821425958214260Human
407342318GWAS991294_Hcholesterol:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS991294 (human)4e-08cholesterol:total lipids ratio, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155821425958214260Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS841568_H GCST90092854 Triglyceride levels in large HDL 115,082 European ancestry individuals A 0.997878 1E-9 9 rs186791139 0.268886 triglyceride measurement (EFO:0004530)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS991294_H GCST90093005 Cholesterol to total lipids ratio in very large HDL 115,056 European ancestry individuals A 0.997878 4E-8 7.398 rs186791139 0.243257 cholesterol:total lipids ratio (EFO:0020943)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
Database Acc Id Source(s)
GWAS Catalog GCST90092854 GWAS Catalog

RGD Curation Notes
Note Type Note Reference